View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7117_high_18 (Length: 271)

Name: NF7117_high_18
Description: NF7117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7117_high_18
NF7117_high_18
[»] chr2 (5 HSPs)
chr2 (4-262)||(14007468-14007729)
chr2 (4-105)||(20957437-20957538)
chr2 (4-102)||(20957612-20957710)
chr2 (1-102)||(17149062-17149163)
chr2 (60-100)||(8760002-8760042)
[»] chr3 (5 HSPs)
chr3 (4-105)||(26667122-26667223)
chr3 (4-105)||(25836367-25836468)
chr3 (8-105)||(548092-548187)
chr3 (11-102)||(9032846-9032937)
chr3 (3-71)||(43819944-43820012)
[»] chr7 (8 HSPs)
chr7 (4-105)||(29598107-29598208)
chr7 (8-115)||(21633327-21633436)
chr7 (4-105)||(21631132-21631225)
chr7 (4-115)||(21631362-21631467)
chr7 (4-98)||(21633093-21633179)
chr7 (30-115)||(9878298-9878384)
chr7 (1-57)||(3232944-3233000)
chr7 (8-57)||(29856101-29856150)
[»] scaffold0060 (1 HSPs)
scaffold0060 (5-115)||(9093-9205)
[»] chr6 (3 HSPs)
chr6 (4-105)||(30488432-30488533)
chr6 (32-105)||(25050859-25050932)
chr6 (25-105)||(26857816-26857895)
[»] chr8 (3 HSPs)
chr8 (4-103)||(35674959-35675058)
chr8 (5-102)||(29456284-29456381)
chr8 (70-105)||(35673477-35673512)
[»] chr4 (9 HSPs)
chr4 (11-102)||(42664932-42665023)
chr4 (4-101)||(10032689-10032785)
chr4 (33-105)||(42665175-42665247)
chr4 (33-105)||(18812702-18812774)
chr4 (32-115)||(18807515-18807599)
chr4 (4-55)||(5653307-5653358)
chr4 (65-104)||(19223142-19223181)
chr4 (23-105)||(8818772-8818853)
chr4 (8-69)||(8678562-8678623)
[»] chr1 (4 HSPs)
chr1 (8-101)||(1284831-1284923)
chr1 (4-80)||(33072760-33072835)
chr1 (4-104)||(10653488-10653584)
chr1 (10-105)||(41892084-41892178)
[»] scaffold0245 (2 HSPs)
scaffold0245 (8-101)||(9476-9568)
scaffold0245 (8-101)||(11098-11190)
[»] scaffold0229 (1 HSPs)
scaffold0229 (8-101)||(9804-9896)
[»] chr5 (5 HSPs)
chr5 (4-105)||(4897433-4897532)
chr5 (8-115)||(21637272-21637381)
chr5 (4-105)||(33688153-33688254)
chr5 (4-105)||(6742425-6742529)
chr5 (4-98)||(33689869-33689963)
[»] scaffold0160 (1 HSPs)
scaffold0160 (22-102)||(28412-28492)


Alignment Details
Target: chr2 (Bit Score: 230; Significance: 1e-127; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 4 - 262
Target Start/End: Complemental strand, 14007729 - 14007468
Alignment:
Q  4 tgagagttatttataggggtgagt----tagtctaactaactcttaactacctaaccagccaactaaccatagtttacatattaactaactatggtttat 99  Q
    ||||||||||||||| ||||||||    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  14007729 tgagagttatttatatgggtgagtaagttagtctaactaactcttaactacctaaccaaccaactaaccatagtttacatattaactaactatggtttat 14007630  T
Q  100 tcactactctaatagtatgcttaatttgttccatgcttatctaattatactttgtctactctctacatttcctcttggattttttcatttcttaacaaac 199  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14007629 tcactactctaatagtatgcttaatttgttccatgcttatctaattatactttgtctactctctacatttcctcttggattttttcatttcttaacaaac 14007530  T
Q  200 atgcacgttggtgatgtcattaagtcatataccctcttttgcttgtactgattttgttcatct 262  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  14007529 atgcacgttggtgatgtcattaagtcatat-ccctcttttgcttgtactgattttgttcatct 14007468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 4 - 105
Target Start/End: Complemental strand, 20957538 - 20957437
Alignment:
Q  4 tgagagttatttataggggtgagttagtctaactaactcttaactacctaaccagccaactaaccatagtttacatattaactaactatggtttattcac 103  Q
    ||||| |||||||||||||||||||||||||||||||||  ||||||||||| | | ||||||||||| ||||||||| | |||||||||||||||||||    
T  20957538 tgagacttatttataggggtgagttagtctaactaactcacaactacctaactaactaactaaccataatttacatataacctaactatggtttattcac 20957439  T
Q  104 ta 105  Q
    ||    
T  20957438 ta 20957437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 4 - 102
Target Start/End: Complemental strand, 20957710 - 20957612
Alignment:
Q  4 tgagagttatttataggggtgagttagtctaactaactcttaactacctaaccagccaactaaccatagtttacatattaactaactatggtttattca 102  Q
    ||||| |||||||||||||||||||||||||||||||||  ||||||||||| | | ||||||||||| ||||||||| | ||||||||||||||||||    
T  20957710 tgagacttatttataggggtgagttagtctaactaactcacaactacctaactaactaactaaccataatttacatataacctaactatggtttattca 20957612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 102
Target Start/End: Original strand, 17149062 - 17149163
Alignment:
Q  1 tgatgagagttatttataggggtgagttagtctaactaactcttaactacctaaccagccaactaaccatagtttacatattaactaactatggtttatt 100  Q
    ||||||| |||| ||| |||| ||| ||||||||||| |||| ||| ||| ||| || ||||||||||||| ||||| ||| ||||||||||||||||||    
T  17149062 tgatgagggttacttacagggatgaattagtctaactgactcctaattacttaaacaaccaactaaccataatttacctatcaactaactatggtttatt 17149161  T
Q  101 ca 102  Q
    ||    
T  17149162 ca 17149163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 60 - 100
Target Start/End: Complemental strand, 8760042 - 8760002
Alignment:
Q  60 caactaaccatagtttacatattaactaactatggtttatt 100  Q
    |||||||||||||||||||||| |||||| |||| ||||||    
T  8760042 caactaaccatagtttacatatcaactaattatgatttatt 8760002  T

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Target: chr3 (Bit Score: 86; Significance: 4e-41; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 4 - 105
Target Start/End: Original strand, 26667122 - 26667223
Alignment:
Q  4 tgagagttatttataggggtgagttagtctaactaactcttaactacctaaccagccaactaaccatagtttacatattaactaactatggtttattcac 103  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||| |||||||||||||||||||||||| ||||||    
T  26667122 tgagagttatttataggggtgagttagtctaactaactcttaactacctaactaaccaactaaccataatttacatattaactaactatggttaattcac 26667221  T
Q  104 ta 105  Q
    ||    
T  26667222 ta 26667223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 4 - 105
Target Start/End: Complemental strand, 25836468 - 25836367
Alignment:
Q  4 tgagagttatttataggggtgagttagtctaactaactcttaactacctaaccagccaactaaccatagtttacatattaactaactatggtttattcac 103  Q
    ||||||||||||||| || |||  ||||||||||||||| |||||||||||| | ||||||| ||||||||||  ||| |||||||||||||||||||||    
T  25836468 tgagagttatttataaggatgaactagtctaactaactcctaactacctaactaaccaactagccatagtttatctatcaactaactatggtttattcac 25836369  T
Q  104 ta 105  Q
    ||    
T  25836368 ta 25836367  T

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Target: chr3; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 8 - 105
Target Start/End: Complemental strand, 548187 - 548092
Alignment:
Q  8 agttatttataggggtgagttagtctaactaactcttaactacctaaccagccaactaaccatagtttacatattaactaactatggtttattcacta 105  Q
    |||||||||||| | ||||||||||||||||||||||||||||||||||| |||||||| ||||||||||  |||| |||| |||| |||||||||||    
T  548187 agttatttatagtg-tgagttagtctaactaactcttaactacctaaccaaccaactaatcatagtttac-cattatctaaatatgatttattcacta 548092  T

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Target: chr3; HSP #4
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 11 - 102
Target Start/End: Original strand, 9032846 - 9032937
Alignment:
Q  11 tatttataggggtgagttagtctaactaactcttaactacctaaccagccaactaaccatagtttacatattaactaactatggtttattca 102  Q
    |||||||| |||  ||||||||||||||||||||||||||  ||||| ||| ||||||||||||| ||||| ||||||||||| ||||||||    
T  9032846 tatttataagggaaagttagtctaactaactcttaactactcaaccaaccagctaaccatagttttcatatcaactaactatgatttattca 9032937  T

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Target: chr3; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 3 - 71
Target Start/End: Original strand, 43819944 - 43820012
Alignment:
Q  3 atgagagttatttataggggtgagttagtctaactaactcttaactacctaaccagccaactaaccata 71  Q
    ||||| |||||||||||| |||||||||||| ||||||| ||||||||||||||| |||||||| ||||    
T  43819944 atgagggttatttataggagtgagttagtcttactaacttttaactacctaaccaaccaactaatcata 43820012  T

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Target: chr7 (Bit Score: 82; Significance: 9e-39; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 4 - 105
Target Start/End: Original strand, 29598107 - 29598208
Alignment:
Q  4 tgagagttatttataggggtgagttagtctaactaactcttaactacctaaccagccaactaaccatagtttacatattaactaactatggtttattcac 103  Q
    ||||||||||||||||||||||||||||||||||||||| |||| ||||||||  | |||||||||||||||||||||||||||||||||||||||||||    
T  29598107 tgagagttatttataggggtgagttagtctaactaactcctaaccacctaacctacaaactaaccatagtttacatattaactaactatggtttattcac 29598206  T
Q  104 ta 105  Q
    ||    
T  29598207 ta 29598208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 8 - 115
Target Start/End: Original strand, 21633327 - 21633436
Alignment:
Q  8 agttatttataggggtgagttagtctaactaactcttaactacctaaccagccaactaaccatagtttacatattaactaactatggtttattcac--ta 105  Q
    |||||||||||| ||||| ||||| |||||||||| |||| ||||||||  ||||||||||||||||||||||| ||||||| |||||||| ||||  ||    
T  21633327 agttatttatagtggtgaattagtataactaactcctaaccacctaacctaccaactaaccatagtttacatatcaactaacaatggtttactcactata 21633426  T
Q  106 ctctaatagt 115  Q
    ||||||||||    
T  21633427 ctctaatagt 21633436  T

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Target: chr7; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 4 - 105
Target Start/End: Original strand, 21631132 - 21631225
Alignment:
Q  4 tgagagttatttataggggtgagttagtctaactaactcttaactacctaaccagccaactaaccatagtttacatattaactaactatggtttattcac 103  Q
    |||| ||||||||||||||||||||||||||||||||||        ||||||  ||||||||||||||||||||||| |||||||||||||||| ||||    
T  21631132 tgagggttatttataggggtgagttagtctaactaactc--------ctaacctaccaactaaccatagtttacatatcaactaactatggtttactcac 21631223  T

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Target: chr7; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 4 - 115
Target Start/End: Original strand, 21631362 - 21631467
Alignment:
Q  4 tgagagttatttataggggtgagttagtctaactaactcttaactacctaaccagccaactaaccatagtttacatattaactaactatggtttattcac 103  Q
    |||| ||||||||||||||||||||||||||||||||||        ||||||  ||||||||||||||||||||||| ||||||| |||||||| ||||    
T  21631362 tgagggttatttataggggtgagttagtctaactaactc--------ctaacctaccaactaaccatagtttacatatcaactaacaatggtttactcac 21631453  T
Q  104 --tactctaatagt 115  Q
      ||||||||||||    
T  21631454 tatactctaatagt 21631467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 4 - 98
Target Start/End: Original strand, 21633093 - 21633179
Alignment:
Q  4 tgagagttatttataggggtgagttagtctaactaactcttaactacctaaccagccaactaaccatagtttacatattaactaactatggttta 98  Q
    |||| |||||||||||||||||| |||||||||||||||        ||||||  ||||||||||||||||||||||| ||||||||||||||||    
T  21633093 tgagggttatttataggggtgagatagtctaactaactc--------ctaacctaccaactaaccatagtttacatatcaactaactatggttta 21633179  T

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Target: chr7; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 30 - 115
Target Start/End: Original strand, 9878298 - 9878384
Alignment:
Q  30 gtctaactaactcttaactacctaaccagccaactaaccatagtttacatattaactaactatggtttattcac--tactctaatagt 115  Q
    ||||||||||||| |||||| ||||| |  ||||||||||||||||| |||||||||| |||||||||||||||  ||||||||||||    
T  9878298 gtctaactaactcctaactatctaac-atacaactaaccatagtttatatattaactacctatggtttattcactatactctaatagt 9878384  T

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Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 3233000 - 3232944
Alignment:
Q  1 tgatgagagttatttataggggtgagttagtctaactaactcttaactacctaacca 57  Q
    |||||||||||||||||| || ||||||||| |||| ||||||||||||||||||||    
T  3233000 tgatgagagttatttataaggatgagttagtgtaacaaactcttaactacctaacca 3232944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 8 - 57
Target Start/End: Original strand, 29856101 - 29856150
Alignment:
Q  8 agttatttataggggtgagttagtctaactaactcttaactacctaacca 57  Q
    ||||||||||||  ||||||| ||||||||||||| ||||||||||||||    
T  29856101 agttatttatagtagtgagttggtctaactaactcctaactacctaacca 29856150  T

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Target: scaffold0060 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 5 - 115
Target Start/End: Original strand, 9093 - 9205
Alignment:
Q  5 gagagttatttataggggtgagttagtctaactaactcttaactacctaaccagccaactaaccatagtttacatattaactaactatggtttattcac- 103  Q
    ||||||||||||||||||||||||||| |||||||||| ||||||||||||||  ||||||||||||||| |||||| |||||||||||||||||||||     
T  9093 gagagttatttataggggtgagttagtgtaactaactcctaactacctaaccaaacaactaaccatagttcacatataaactaactatggtttattcact 9192  T
Q  104 -tactctaatagt 115  Q
     ||||||||||||    
T  9193 atactctaatagt 9205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 78; Significance: 2e-36; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 4 - 105
Target Start/End: Complemental strand, 30488533 - 30488432
Alignment:
Q  4 tgagagttatttataggggtgagttagtctaactaactcttaactacctaaccagccaactaaccatagtttacatattaactaactatggtttattcac 103  Q
    |||||| ||||||||||||||||||||||||||||||| ||||||| ||||||| ||||| ||||||| |||||||||||||||||||||||||||||||    
T  30488533 tgagagctatttataggggtgagttagtctaactaacttttaactatctaaccaaccaacaaaccataatttacatattaactaactatggtttattcac 30488434  T
Q  104 ta 105  Q
    ||    
T  30488433 ta 30488432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 32 - 105
Target Start/End: Complemental strand, 25050932 - 25050859
Alignment:
Q  32 ctaactaactcttaactacctaaccagccaactaaccatagtttacatattaactaactatggtttattcacta 105  Q
    ||||||||||||||||||||||||||   ||||||||||||||||||||||| |||||||||||||||||||||    
T  25050932 ctaactaactcttaactacctaaccaagtaactaaccatagtttacatattatctaactatggtttattcacta 25050859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 25 - 105
Target Start/End: Complemental strand, 26857895 - 26857816
Alignment:
Q  25 agttagtctaactaactcttaactacctaaccagccaactaaccatagtttacatattaactaactatggtttattcacta 105  Q
    ||||||||||||||||||||||||||||||||| |||| ||||  || |||||  || | |||||||||| ||||||||||    
T  26857895 agttagtctaactaactcttaactacctaaccaaccaattaactctaatttac-catcatctaactatggcttattcacta 26857816  T

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Target: chr8 (Bit Score: 76; Significance: 3e-35; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 4 - 103
Target Start/End: Original strand, 35674959 - 35675058
Alignment:
Q  4 tgagagttatttataggggtgagttagtctaactaactcttaactacctaaccagccaactaaccatagtttacatattaactaactatggtttattcac 103  Q
    ||||||||||||||||| ||||||||||||||||||||| |||||| ||||| | ||||||||||||||||||||||||||||||||||| |||||||||    
T  35674959 tgagagttatttataggagtgagttagtctaactaactcctaactatctaactaaccaactaaccatagtttacatattaactaactatgatttattcac 35675058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 5 - 102
Target Start/End: Original strand, 29456284 - 29456381
Alignment:
Q  5 gagagttatttataggggtgagttagtctaactaactcttaactacctaaccagccaactaaccatagtttacatattaactaactatggtttattca 102  Q
    |||||||||||| | |||||||||||||||| |||||| ||||||||||||||   ||||||| ||||||||| |||| |||||||||| || |||||    
T  29456284 gagagttatttacaagggtgagttagtctaaataactcataactacctaaccaattaactaactatagtttacttattgactaactatgattgattca 29456381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 70 - 105
Target Start/End: Original strand, 35673477 - 35673512
Alignment:
Q  70 tagtttacatattaactaactatggtttattcacta 105  Q
    ||||||||||||||||||||||||||||||||||||    
T  35673477 tagtttacatattaactaactatggtttattcacta 35673512  T

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Target: chr4 (Bit Score: 76; Significance: 3e-35; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 11 - 102
Target Start/End: Complemental strand, 42665023 - 42664932
Alignment:
Q  11 tatttataggggtgagttagtctaactaactcttaactacctaaccagccaactaaccatagtttacatattaactaactatggtttattca 102  Q
    |||||||| ||||||||||||||||||||||||||||||||||| || |||||||||| |||||||||||||||||||||||||||||||||    
T  42665023 tatttataagggtgagttagtctaactaactcttaactacctaaacaaccaactaaccgtagtttacatattaactaactatggtttattca 42664932  T

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Target: chr4; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 4 - 101
Target Start/End: Original strand, 10032689 - 10032785
Alignment:
Q  4 tgagagttatttataggggtgagttagtctaactaactcttaactacctaaccagccaactaaccatagtttacatattaactaactatggtttattc 101  Q
    |||||||||||||||||| ||||||||||||||  ||||||||||||||||||| ||||||||||||||||||||| | |||||||||||||||||||    
T  10032689 tgagagttatttataggg-tgagttagtctaaccgactcttaactacctaaccaaccaactaaccatagtttacatctcaactaactatggtttattc 10032785  T

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Target: chr4; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 33 - 105
Target Start/End: Original strand, 42665175 - 42665247
Alignment:
Q  33 taactaactcttaactacctaaccagccaactaaccatagtttacatattaactaactatggtttattcacta 105  Q
    |||||||||||||||||||||| ||   ||||||||||| |||||||||||||||||||||||||||||||||    
T  42665175 taactaactcttaactacctaaacaaataactaaccataatttacatattaactaactatggtttattcacta 42665247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 33 - 105
Target Start/End: Original strand, 18812702 - 18812774
Alignment:
Q  33 taactaactcttaactacctaaccagccaactaaccatagtttacatattaactaactatggtttattcacta 105  Q
    ||||||||||||||||||||||| |   ||||||||||||||||||||||| |||| ||||||||||||||||    
T  18812702 taactaactcttaactacctaactaagtaactaaccatagtttacatattatctaattatggtttattcacta 18812774  T

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Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 32 - 115
Target Start/End: Original strand, 18807515 - 18807599
Alignment:
Q  32 ctaactaactcttaactacctaaccagccaactaaccatagtttacatattaactaactatggtttattcac--tactctaatagt 115  Q
    |||||||||||||| |||||||||||   ||||||||||||||||||||||| |||  ||||||||||||||  ||||||||||||    
T  18807515 ctaactaactctta-ctacctaaccaagtaactaaccatagtttacatattatctagttatggtttattcactatactctaatagt 18807599  T

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Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 4 - 55
Target Start/End: Original strand, 5653307 - 5653358
Alignment:
Q  4 tgagagttatttataggggtgagttagtctaactaactcttaactacctaac 55  Q
    ||||| |||||||||||||||||||||| |||||||||| ||||||||||||    
T  5653307 tgagacttatttataggggtgagttagtataactaactcctaactacctaac 5653358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 65 - 104
Target Start/End: Original strand, 19223142 - 19223181
Alignment:
Q  65 aaccatagtttacatattaactaactatggtttattcact 104  Q
    |||||||||||| |||||||||||||||||||||||||||    
T  19223142 aaccatagtttatatattaactaactatggtttattcact 19223181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 23 - 105
Target Start/End: Original strand, 8818772 - 8818853
Alignment:
Q  23 tgagttagtctaactaactcttaactacctaaccagccaactaaccatagtttacatattaactaactatggtttattcacta 105  Q
    ||||||||||||||||| | |||||||| |||||| | ||| |||  |||||||| ||||||||||| ||| |||||||||||    
T  8818772 tgagttagtctaactaatttttaactacttaaccaacaaacaaactctagtttac-tattaactaaccatgatttattcacta 8818853  T

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Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 8 - 69
Target Start/End: Complemental strand, 8678623 - 8678562
Alignment:
Q  8 agttatttataggggtgagttagtctaactaactcttaactacctaaccagccaactaacca 69  Q
    ||||||||||||||||| ||||| ||||||||||  |||||||||| ||| ||||| |||||    
T  8678623 agttatttataggggtgggttagactaactaactgctaactacctagccaaccaaccaacca 8678562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 74; Significance: 5e-34; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 8 - 101
Target Start/End: Complemental strand, 1284923 - 1284831
Alignment:
Q  8 agttatttataggggtgagttagtctaactaactcttaactacctaaccagccaactaaccatagtttacatattaactaactatggtttattc 101  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| | |||||||||||||||||||    
T  1284923 agttatttataggg-tgagttagtctaactaactcttaactacctaaccaaccaactaaccatagtttacatctcaactaactatggtttattc 1284831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 4 - 80
Target Start/End: Complemental strand, 33072835 - 33072760
Alignment:
Q  4 tgagagttatttataggggtgagttagtctaactaactcttaactacctaaccagccaactaaccatagtttacata 80  Q
    ||||||||||||||| |||||||| || |||||||||||||||||||||||||| ||||||||||||||||||||||    
T  33072835 tgagagttatttataagggtgagtcag-ctaactaactcttaactacctaaccaaccaactaaccatagtttacata 33072760  T

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Target: chr1; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 4 - 104
Target Start/End: Complemental strand, 10653584 - 10653488
Alignment:
Q  4 tgagagttatttataggggtgagttagtctaactaactcttaactacctaaccagccaactaaccatagtttacatattaactaactatggtttattcac 103  Q
    |||||| |||||| |||||||||||||||||||||||||||||| ||||||    ||||||||||||| ||||| ||| ||||||||||  |||||||||    
T  10653584 tgagagctatttacaggggtgagttagtctaactaactcttaaccacctaa----ccaactaaccataatttacgtataaactaactatactttattcac 10653489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 10 - 105
Target Start/End: Complemental strand, 41892178 - 41892084
Alignment:
Q  10 ttatttataggggtgagttagtctaactaactcttaactacctaaccagccaactaaccatagtttacatattaactaactatggtttattcacta 105  Q
    |||||||||||||||||||||| ||||||||||  ||||||||||||| |||||||| |||| || || ||| |||||||| ||||||||||||||    
T  41892178 ttatttataggggtgagttagtataactaactcccaactacctaaccaaccaactaatcatacttcacctatcaactaact-tggtttattcacta 41892084  T

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Target: scaffold0245 (Bit Score: 70; Significance: 1e-31; HSPs: 2)
Name: scaffold0245
Description:

Target: scaffold0245; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 8 - 101
Target Start/End: Complemental strand, 9568 - 9476
Alignment:
Q  8 agttatttataggggtgagttagtctaactaactcttaactacctaaccagccaactaaccatagtttacatattaactaactatggtttattc 101  Q
    |||||||||||||| |||||||||||||||||| |||||||||||||||| ||||||||||||||||||||| | |||||||||||||||||||    
T  9568 agttatttataggg-tgagttagtctaactaacacttaactacctaaccaaccaactaaccatagtttacatctcaactaactatggtttattc 9476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0245; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 8 - 101
Target Start/End: Complemental strand, 11190 - 11098
Alignment:
Q  8 agttatttataggggtgagttagtctaactaactcttaactacctaaccagccaactaaccatagtttacatattaactaactatggtttattc 101  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||| || | |||||||||||||||||||    
T  11190 agttatttataggg-tgagttagtctaactaactcttaactacctaaccaaccaactaaccatagtttatatctcaactaactatggtttattc 11098  T

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Target: scaffold0229 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: scaffold0229
Description:

Target: scaffold0229; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 8 - 101
Target Start/End: Complemental strand, 9896 - 9804
Alignment:
Q  8 agttatttataggggtgagttagtctaactaactcttaactacctaaccagccaactaaccatagtttacatattaactaactatggtttattc 101  Q
    |||||||||||||| |||||||||||||||||| |||||||||||||||| ||||||||||||||||||||| | |||||||||||||||||||    
T  9896 agttatttataggg-tgagttagtctaactaacacttaactacctaaccaaccaactaaccatagtttacatctcaactaactatggtttattc 9804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 70; Significance: 1e-31; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 4 - 105
Target Start/End: Original strand, 4897433 - 4897532
Alignment:
Q  4 tgagagttatttataggggtgagttagtctaactaactcttaactacctaaccagccaactaaccatagtttacatattaactaactatggtttattcac 103  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||| || |||||||||||||||||||  |||| |||||||||||||||||||    
T  4897433 tgagagttatttataggg-tgagttagtctaactaactcttaactacctaatcaaccaactaaccatagtttac-cattatctaactatggtttattcac 4897530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 8 - 115
Target Start/End: Original strand, 21637272 - 21637381
Alignment:
Q  8 agttatttataggggtgagttagtctaactaactcttaactacctaaccagccaactaaccatagtttacatattaactaactatggtttattcac--ta 105  Q
    ||||||||||| |||||||||||| |||||||||| |||||||||||||| ||||||||| ||||||  ||||| |||||||||||||||||||||  ||    
T  21637272 agttatttataagggtgagttagtgtaactaactcctaactacctaaccaaccaactaactatagttctcatataaactaactatggtttattcactata 21637371  T
Q  106 ctctaatagt 115  Q
    ||||||||||    
T  21637372 ctctaatagt 21637381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 4 - 105
Target Start/End: Complemental strand, 33688254 - 33688153
Alignment:
Q  4 tgagagttatttataggggtgagttagtctaactaactcttaactacctaaccagccaactaaccatagtttacatattaactaactatggtttattcac 103  Q
    |||||| |||| |||| |||| |||||||| | |||||||||| |||||||||| | ||| ||||||| |||||||||||||||||||||||||| ||||    
T  33688254 tgagagctattaatagaggtgggttagtcttagtaactcttaaatacctaaccaactaaccaaccataatttacatattaactaactatggtttaatcac 33688155  T
Q  104 ta 105  Q
    ||    
T  33688154 ta 33688153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 4 - 105
Target Start/End: Complemental strand, 6742529 - 6742425
Alignment:
Q  4 tgagagttatttataggggtgagttagtctaactaactcttaactacctaaccagccaactaaccatagtttacatattaactaacta---tggtttatt 100  Q
    ||||||||||||||||  || | ||||| |||||||||||||| |||||||||| ||||||||||||| |||| ||||||| ||||||   |||||||||    
T  6742529 tgagagttatttatagaagtaaattagtttaactaactcttaattacctaaccaaccaactaaccataatttatatattaattaactatattggtttatt 6742430  T
Q  101 cacta 105  Q
    |||||    
T  6742429 cacta 6742425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 4 - 98
Target Start/End: Complemental strand, 33689963 - 33689869
Alignment:
Q  4 tgagagttatttataggggtgagttagtctaactaactcttaactacctaaccagccaactaaccatagtttacatattaactaactatggttta 98  Q
    |||||| |||||||| |||  ||||||||||| | ||||||||||||||||| | |||| || ||||||||||| ||||||||||||||||||||    
T  33689963 tgagagctatttataagggcaagttagtctaattgactcttaactacctaactaaccaattatccatagtttacttattaactaactatggttta 33689869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0160 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0160
Description:

Target: scaffold0160; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 22 - 102
Target Start/End: Complemental strand, 28492 - 28412
Alignment:
Q  22 gtgagttagtctaactaactcttaactacctaaccagccaactaaccatagtttacatattaactaactatggtttattca 102  Q
    |||||||| ||||||||||||||||||   |||||| ||||||||||||||||||| ||| ||||||||||||||||||||    
T  28492 gtgagttaatctaactaactcttaactgtataaccaaccaactaaccatagtttacctatcaactaactatggtttattca 28412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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