View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7117_high_22 (Length: 254)
Name: NF7117_high_22
Description: NF7117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7117_high_22 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 190; Significance: 1e-103; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 20 - 241
Target Start/End: Complemental strand, 23091326 - 23091105
Alignment:
| Q |
20 |
ttaatatcatcttgattacgtgcacatatatgcacacttgcaccaaattctgctaactcttccacaattgcatacctgattgattaatcacaaaattaac |
119 |
Q |
| |
|
||||||||||||||||| | ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23091326 |
ttaatatcatcttgatttcttgcacatatatgcacacttgccccaaattctgctaactcttccacaattgcatacctgattgattaatcacaaaattaac |
23091227 |
T |
|
| Q |
120 |
atgataaattacattacatgttctcattagagataatatatttgcattagagaactgaccctatgcctcgtgttccaccagtcactagagctgtcattcc |
219 |
Q |
| |
|
||||||||||| |||||||||||||||| ||||||| ||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
23091226 |
atgataaattatattacatgttctcatttgagataagatatttgcattagagaactaaccctaagcctcgtgttccaccagtcactagagctgtcattcc |
23091127 |
T |
|
| Q |
220 |
ttggagtgaccatctttgatct |
241 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
23091126 |
ttggagtgaccatctttgatct |
23091105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 20 - 237
Target Start/End: Complemental strand, 23063776 - 23063559
Alignment:
| Q |
20 |
ttaatatcatcttgattacgtgcacatatatgcacacttgcaccaaattctgctaactcttccacaattgcatacctgattgattaatcacaaaattaac |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23063776 |
ttaatatcatcttgattacgtgcacatatatgcacacttgccccaaattctgctaactcttccacaattgcatacctgattgattaatcacaaaattaac |
23063677 |
T |
|
| Q |
120 |
atgataaattacattacatgttctcattagagataatatatttgcattagagaactgaccctatgcctcgtgttccaccagtcactagagctgtcattcc |
219 |
Q |
| |
|
||||| ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
23063676 |
atgattcattacattacatgttctcattagtgataagatatttgcattagagaactgaccctatgcctcgtgttccaccagttactagagctgtcattcc |
23063577 |
T |
|
| Q |
220 |
ttggagtgaccatctttg |
237 |
Q |
| |
|
|| ||||||||| |||| |
|
|
| T |
23063576 |
atgaagtgaccatttttg |
23063559 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 20 - 241
Target Start/End: Complemental strand, 23080438 - 23080198
Alignment:
| Q |
20 |
ttaatatcatcttgattacgtgcacatatatgcacacttgcaccaaattctgctaactcttccacaattgcatacctgattgattaatcacaaaattaac |
119 |
Q |
| |
|
|||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| ||| |
|
|
| T |
23080438 |
ttaatatcttcttgattgcgtgcacatatatgcacacttgcaccaaattctgctaactcttccacaattgcatacctaattgattattcacaaaagaaac |
23080339 |
T |
|
| Q |
120 |
a-------------------tgataaattacattacatgttctcattagagataatatatttgcattagagaactgaccctatgcctcgtgttccaccag |
200 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23080338 |
aaaacaaaataaaattatgatgataaattacattacatgttctcattagagataatatatttgcattagagaactgaccctatgcctcgtgttccaccag |
23080239 |
T |
|
| Q |
201 |
tcactagagctgtcattccttggagtgaccatctttgatct |
241 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23080238 |
tcactagagctgtcattccttggagtgaccatctttgatct |
23080198 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 20 - 92
Target Start/End: Complemental strand, 23056569 - 23056497
Alignment:
| Q |
20 |
ttaatatcatcttgattacgtgcacatatatgcacacttgcaccaaattctgctaactcttccacaattgcat |
92 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||| ||||| ||||||||| |||| |||||||||||||||| |
|
|
| T |
23056569 |
ttaatatcatcttgatttcgtgcacatatatgcacccttgccccaaattctactaattcttccacaattgcat |
23056497 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 19 - 96
Target Start/End: Complemental strand, 23034973 - 23034896
Alignment:
| Q |
19 |
attaatatcatcttgattacgtgcacatatatgcacacttgcaccaaattctgctaactcttccacaattgcatacct |
96 |
Q |
| |
|
||||||||| |||| |||||||||||||| ||||||| ||| ||||||||||||||||||||||||||||| ||||| |
|
|
| T |
23034973 |
attaatatcttcttcattacgtgcacatacatgcacagctgctccaaattctgctaactcttccacaattgcgtacct |
23034896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 172 - 241
Target Start/End: Complemental strand, 23056388 - 23056319
Alignment:
| Q |
172 |
aactgaccctatgcctcgtgttccaccagtcactagagctgtcattccttggagtgaccatctttgatct |
241 |
Q |
| |
|
|||||||||||||||||| ||||| |||||||| ||||||||| | |||||||||||||||||||||||| |
|
|
| T |
23056388 |
aactgaccctatgcctcgggttcccccagtcacaagagctgtcttcccttggagtgaccatctttgatct |
23056319 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 19 - 96
Target Start/End: Complemental strand, 23026165 - 23026088
Alignment:
| Q |
19 |
attaatatcatcttgattacgtgcacatatatgcacacttgcaccaaattctgctaactcttccacaattgcatacct |
96 |
Q |
| |
|
||||||||| |||| |||||||||||||||||||||| ||| |||||||| ||||||||||| |||||||| ||||| |
|
|
| T |
23026165 |
attaatatcttcttcattacgtgcacatatatgcacagatgctccaaattcagctaactcttcaacaattgcgtacct |
23026088 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University