View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7117_high_24 (Length: 250)
Name: NF7117_high_24
Description: NF7117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7117_high_24 |
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Alignment Details
Target: chr5 (Bit Score: 124; Significance: 7e-64; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 92 - 239
Target Start/End: Original strand, 31784865 - 31785012
Alignment:
| Q |
92 |
agaaaatagtgaaagggctattggttgcagccgcatgagctgctgcagcaagaagtcccaagtgcatactatcagttgacaatactaaggaaggcatcac |
191 |
Q |
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| T |
31784865 |
agaaaatagtgaaagggctattggttgcagccgcatgagctactgcagcaagaagtcccaagtgcaaactatcagttgacaatactgaggaaggcattac |
31784964 |
T |
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| Q |
192 |
agtttgtggccagctggcatggcggataccaaaaagcaattggttctt |
239 |
Q |
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| T |
31784965 |
agtttgtggccagatagcatggcggataccaaaaagcaattggttctt |
31785012 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 23 - 87
Target Start/End: Original strand, 31784714 - 31784783
Alignment:
| Q |
23 |
actcaagcatgatactcagg-----tatgacaaattcggatggacacacactgaattgaaaagaataaaa |
87 |
Q |
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| T |
31784714 |
actcaagcatgatactcagggacggtatgacaaattcggatggacacgcactgaattgaaaagaataaaa |
31784783 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 120; Significance: 2e-61; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 92 - 239
Target Start/End: Complemental strand, 32801853 - 32801706
Alignment:
| Q |
92 |
agaaaatagtgaaagggctattggttgcagccgcatgagctgctgcagcaagaagtcccaagtgcatactatcagttgacaatactaaggaaggcatcac |
191 |
Q |
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| T |
32801853 |
agaaaatagtgaaagggctattggttgcagccgcatgagctgctgcagcaagaagtcccaagtgcgtactatcagttgacaatactgaggaaggcatcgc |
32801754 |
T |
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| Q |
192 |
agtttgtggccagctggcatggcggataccaaaaagcaattggttctt |
239 |
Q |
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| T |
32801753 |
agtttgtggtcagctagcacggcggataccaagaagcaattggttctt |
32801706 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 92 - 239
Target Start/End: Original strand, 5909394 - 5909541
Alignment:
| Q |
92 |
agaaaatagtgaaagggctattggttgcagccgcatgagctgctgcagcaagaagtcccaagtgcatactatcagttgacaatactaaggaaggcatcac |
191 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| |
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| T |
5909394 |
agaaaatagtgaaacggctattggttgcagccgcatgagctgctgcagcaagaagtcccaagtgcatactatcacttgacaatactgaggaaggcatcac |
5909493 |
T |
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| Q |
192 |
agtttgtggccagctggcatggcggataccaaaaagcaattggttctt |
239 |
Q |
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| T |
5909494 |
agtttgtggtcggctagcacggcgaataccaagaagcaattggttctt |
5909541 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 41 - 87
Target Start/End: Complemental strand, 32801978 - 32801932
Alignment:
| Q |
41 |
ggtatgacaaattcggatggacacacactgaattgaaaagaataaaa |
87 |
Q |
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| T |
32801978 |
ggtatgacaaatttggatggacacgcactgaattgaaaagaataaaa |
32801932 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 41 - 87
Target Start/End: Original strand, 5909267 - 5909313
Alignment:
| Q |
41 |
ggtatgacaaattcggatggacacacactgaattgaaaagaataaaa |
87 |
Q |
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| T |
5909267 |
ggtatgacaaattcggatggacacgcactgaatataaaagaataaaa |
5909313 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 92 - 190
Target Start/End: Original strand, 34081573 - 34081671
Alignment:
| Q |
92 |
agaaaatagtgaaagggctattggttgcagccgcatgagctgctgcagcaagaagtcccaagtgcatactatcagttgacaatactaaggaaggcatca |
190 |
Q |
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| T |
34081573 |
agaaaatggtgaaacgactgtttgttgcagctgcatgagctgcagcagcaagcagccccaagtgcatgctatcacttgacaacactgatgaaggcatca |
34081671 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 124 - 184
Target Start/End: Original strand, 42567489 - 42567549
Alignment:
| Q |
124 |
gcatgagctgctgcagcaagaagtcccaagtgcatactatcagttgacaatactaaggaag |
184 |
Q |
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| T |
42567489 |
gcatgagctgctgcagccaggattccaatgtgcatactatcacttgacagtactgaggaag |
42567549 |
T |
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