View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7117_high_36 (Length: 237)
Name: NF7117_high_36
Description: NF7117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7117_high_36 |
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Alignment Details
Target: chr1 (Bit Score: 202; Significance: 1e-110; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 653753 - 653532
Alignment:
| Q |
1 |
gatttaatgatcttcttactaagcctttggctcacacgcaatttagtaatcttcggtccaagatgcaagttactgatggcaacttcatcttgagggggtg |
100 |
Q |
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| T |
653753 |
gatttaatgatctccttactaagcctttggctcacacgtaatttagtgatcttcggtccaagatgcaagttactgatggcaacttcatcttgagggggcg |
653654 |
T |
|
| Q |
101 |
tattggataatattgcctttgactcaacctcacgtgaatcaagcattcaacaacaatgattctattctcttcttatagttgacctataatcatttacatt |
200 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
653653 |
tattggataatattgcctttgactcagcctcacgtgaatcaagcattcaacaacaatgattctattctcttcttatagttgacctataatcatttacatt |
653554 |
T |
|
| Q |
201 |
aatgtatttaatcatgtatgtg |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
653553 |
aatgtatttaatcatgtatgtg |
653532 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 102 - 203
Target Start/End: Complemental strand, 656519 - 656418
Alignment:
| Q |
102 |
attggataatattgcctttgactcaacctcacgtgaatcaagcattcaacaacaatgattctattctcttcttatagttgacctataatcatttacatta |
201 |
Q |
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|||| |||||||| ||||||||| | |||||||||||||||||||||||| |||| |||| ||||||||||| |||||||||||| |||||||||||||| |
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| T |
656519 |
attgaataatatttcctttgactaatcctcacgtgaatcaagcattcaacgacaacgattttattctcttctcatagttgacctacaatcatttacatta |
656420 |
T |
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| Q |
202 |
at |
203 |
Q |
| |
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|| |
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|
| T |
656419 |
at |
656418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 101 - 151
Target Start/End: Original strand, 656364 - 656414
Alignment:
| Q |
101 |
tattggataatattgcctttgactcaacctcacgtgaatcaagcattcaac |
151 |
Q |
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| T |
656364 |
tattggataatatttcccttgactcagcctcacgtggatcaagcattcaac |
656414 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 8 - 45
Target Start/End: Complemental strand, 653785 - 653748
Alignment:
| Q |
8 |
tgatcttcttactaagcctttggctcacacgcaattta |
45 |
Q |
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| T |
653785 |
tgatcttcttactaagcctttggctcacacgcgattta |
653748 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 51 - 105
Target Start/End: Complemental strand, 40094313 - 40094259
Alignment:
| Q |
51 |
cttcggtccaagatgcaagttactgatggcaacttcatcttgagggggtgtattg |
105 |
Q |
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|
| T |
40094313 |
cttcggtccaagatgcaagttactgatggcaactacatcttgagggggcgtattg |
40094259 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 51 - 105
Target Start/End: Original strand, 6407617 - 6407671
Alignment:
| Q |
51 |
cttcggtccaagatgcaagttactgatggcaacttcatcttgagggggtgtattg |
105 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||| |||||| |
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|
| T |
6407617 |
cttcggtccaagatgcaagttactgatggcaactacatcttgagggggcgtattg |
6407671 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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