View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7117_high_41 (Length: 212)

Name: NF7117_high_41

Description: NF7117

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF7117_high_41

[»] chr3 (2 HSPs)

Target: chr3 (Bit Score: 165; Significance: 2e-88; HSPs: 2)

Name: chr3

Description:

Target: chr3; HSP #1

Raw Score: 165; E-Value: 2e-88

Query Start/End: Original strand, 18 - 186

Target Start/End: Original strand, 42079658 - 42079826

Alignment:

Q	18	ctacaaaatggagagaacggttataacactatctattcattgacctcattaagtaatgggtattattggaattcaaaggcgagtggttagttttacatcg	117	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	42079658	ctacaaaatggagagaacagttataacactatctattcattgacctcattaagtaatgggtattattggaattcaaaggcgagtggttagttttacatcg	42079757	T

Q	118	gatagaaataggcaaaatgaagcaaccagtgtattcaacgccttaaaccaccacgaaggtctagcgcac	186	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	42079758	gatagaaataggcaaaatgaagcaaccagtgtattcaacgccttaaaccaccacgaaggtctagcgcac	42079826	T

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Target: chr3; HSP #2

Raw Score: 33; E-Value: 0.000000001

Query Start/End: Original strand, 18 - 62

Target Start/End: Original strand, 42082263 - 42082307

Alignment:

Q	18	ctacaaaatggagagaacggttataacactatctattcattgacc	62	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	42082263	ctacaaaatggagagaacatttatagcactatctattcattgacc	42082307	T

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