View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7117_high_5 (Length: 445)

Name: NF7117_high_5
Description: NF7117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7117_high_5
NF7117_high_5
[»] chr1 (11 HSPs)
chr1 (1-429)||(5156772-5157202)
chr1 (368-427)||(4549483-4549543)
chr1 (368-408)||(23373275-23373315)
chr1 (367-399)||(39803860-39803892)
chr1 (383-428)||(33204335-33204380)
chr1 (368-428)||(2295165-2295225)
chr1 (368-428)||(7927935-7927995)
chr1 (368-408)||(8780386-8780426)
chr1 (368-416)||(15943029-15943077)
chr1 (369-409)||(16322918-16322958)
chr1 (383-427)||(39976152-39976196)
[»] chr3 (9 HSPs)
chr3 (2-52)||(47563153-47563203)
chr3 (371-428)||(24158457-24158515)
chr3 (370-427)||(3775793-3775851)
chr3 (368-406)||(37273202-37273240)
chr3 (364-406)||(49772632-49772674)
chr3 (368-405)||(49845505-49845542)
chr3 (368-428)||(30443962-30444022)
chr3 (372-420)||(35394709-35394757)
chr3 (368-416)||(46778144-46778192)
[»] chr4 (9 HSPs)
chr4 (368-428)||(18628494-18628555)
chr4 (369-428)||(25904164-25904223)
chr4 (368-409)||(6987702-6987743)
chr4 (376-408)||(9316601-9316633)
chr4 (389-429)||(15173243-15173283)
chr4 (368-427)||(25583660-25583720)
chr4 (368-408)||(25717661-25717701)
chr4 (368-408)||(27123314-27123354)
chr4 (368-408)||(41097218-41097258)
[»] chr7 (5 HSPs)
chr7 (369-409)||(48157081-48157121)
chr7 (376-429)||(30751595-30751649)
chr7 (376-422)||(45593605-45593651)
chr7 (369-429)||(22387836-22387897)
chr7 (368-408)||(4966224-4966264)
[»] chr6 (8 HSPs)
chr6 (368-427)||(27857426-27857486)
chr6 (368-401)||(2027767-2027800)
chr6 (368-428)||(34939812-34939873)
chr6 (368-408)||(24782259-24782299)
chr6 (368-408)||(32917265-32917305)
chr6 (368-429)||(32171535-32171597)
chr6 (368-408)||(2460113-2460153)
chr6 (368-408)||(32976046-32976086)
[»] chr2 (10 HSPs)
chr2 (368-429)||(15120251-15120313)
chr2 (368-405)||(39962264-39962301)
chr2 (368-408)||(9996806-9996846)
chr2 (370-429)||(19243603-19243663)
chr2 (368-408)||(29429719-29429759)
chr2 (368-401)||(4550815-4550848)
chr2 (368-428)||(27237834-27237895)
chr2 (383-428)||(30331835-30331880)
chr2 (368-400)||(18884935-18884967)
chr2 (368-427)||(43985277-43985337)
[»] chr5 (3 HSPs)
chr5 (383-428)||(15015927-15015972)
chr5 (368-409)||(28586727-28586768)
chr5 (368-401)||(38047848-38047881)
[»] chr8 (8 HSPs)
chr8 (368-401)||(30191110-30191143)
chr8 (368-409)||(39551170-39551211)
chr8 (368-401)||(43393741-43393774)
chr8 (368-408)||(4055578-4055618)
chr8 (368-427)||(6950390-6950450)
chr8 (370-429)||(7918721-7918781)
chr8 (369-401)||(29699342-29699374)
chr8 (383-427)||(38648435-38648479)


Alignment Details
Target: chr1 (Bit Score: 338; Significance: 0; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 1 - 429
Target Start/End: Original strand, 5156772 - 5157202
Alignment:
Q  1 cgattagcctctgaagaagcgcgtgctagagctgctgaagccgctcagaaaaggtttatccctttctcttttgtcctgaatattctaccaaacttaattg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5156772 cgattagcctctgaagaagcgcgtgctagagctgctgaagccgctcagaaaaggtttatccctttctcttttgtcctgaatattctaccaaacttaattg 5156871  T
Q  101 tacgattcctacaaaagnnnnnnnnnnnnnnnata-cggattttgggttttcatttcaatactcatatgggtttttatattctttatgatcatactggtt 199  Q
    |||||||||||||||||                |  |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5156872 tacgattcctacaaaagttttttttttttttttttgcggattttggtttttcatttcaatactcatatgggtttttatattctttatgatcatactggtt 5156971  T
Q  200 tagattaatttgtatcaaaaaatgaattttggtcactactgtataaatttcaattcaatttagattataatctgttatttgttgagctcaatgatgtgat 299  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  5156972 tagattaatttgtattaaaaaatgaattttggtcactactgtataaatttcaattcaatttagattataatctgttatttgtagagctcaatgatgtgat 5157071  T
Q  300 acattcatgtgtaacacgtttcatacactagagataagctcaaataagctaattcaaacgagcccatctcataagttgtttctataagctctcccaaaca 399  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5157072 acattcatgtgtaacacgtttcatacactagagataagctcaaataagccaattcaaacgagcccatctcataagttgtttctataagctctcccaaaca 5157171  T
Q  400 gtttcacaa-agtttatgtcagtagataagt 429  Q
    |||||||||  ||||||||| ||||||||||    
T  5157172 gtttcacaagtgtttatgtccgtagataagt 5157202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 368 - 427
Target Start/End: Complemental strand, 4549543 - 4549483
Alignment:
Q  368 tcataagttgtttctataagctctcccaaacagtttcacaaa-gtttatgtcagtagataa 427  Q
    |||||||||||||||||||||||||||||||||| ||| ||| | ||||| ||||||||||    
T  4549543 tcataagttgtttctataagctctcccaaacagtctcagaaatgcttatgccagtagataa 4549483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 368 - 408
Target Start/End: Complemental strand, 23373315 - 23373275
Alignment:
Q  368 tcataagttgtttctataagctctcccaaacagtttcacaa 408  Q
    |||||||||||||||||||||||||||||||| | ||||||    
T  23373315 tcataagttgtttctataagctctcccaaacaatctcacaa 23373275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 367 - 399
Target Start/End: Complemental strand, 39803892 - 39803860
Alignment:
Q  367 ctcataagttgtttctataagctctcccaaaca 399  Q
    |||||||||||||||||||||||||||||||||    
T  39803892 ctcataagttgtttctataagctctcccaaaca 39803860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 383 - 428
Target Start/End: Complemental strand, 33204380 - 33204335
Alignment:
Q  383 ataagctctcccaaacagtttcacaaagtttatgtcagtagataag 428  Q
    ||||| ||||||||||||| |||||||  |||||||||||||||||    
T  33204380 ataagttctcccaaacagtctcacaaaacttatgtcagtagataag 33204335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 368 - 428
Target Start/End: Original strand, 2295165 - 2295225
Alignment:
Q  368 tcataagttgtttctataagctctcccaaacagtttcacaaagtttatgtcagtagataag 428  Q
    ||||||| |||||  ||||| ||||||||||||| |||||||  ||||| |||||||||||    
T  2295165 tcataagctgttttcataagttctcccaaacagtctcacaaaacttatgccagtagataag 2295225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 368 - 428
Target Start/End: Original strand, 7927935 - 7927995
Alignment:
Q  368 tcataagttgtttctataagctctcccaaacagtttcacaaagtttatgtcagtagataag 428  Q
    ||||||||||| |  ||| |||||||||||||   ||||||| ||||||||||||||||||    
T  7927935 tcataagttgtattcataggctctcccaaacaaagtcacaaaatttatgtcagtagataag 7927995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 368 - 408
Target Start/End: Complemental strand, 8780426 - 8780386
Alignment:
Q  368 tcataagttgtttctataagctctcccaaacagtttcacaa 408  Q
    ||||||||||||| ||||||||||| ||||||| |||||||    
T  8780426 tcataagttgtttttataagctctctcaaacagattcacaa 8780386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 368 - 416
Target Start/End: Original strand, 15943029 - 15943077
Alignment:
Q  368 tcataagttgtttctataagctctcccaaacagtttcacaaagtttatg 416  Q
    |||| ||||||||||||| | ||||| ||||||| ||||||||||||||    
T  15943029 tcatcagttgtttctatatgttctcctaaacagtctcacaaagtttatg 15943077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 369 - 409
Target Start/End: Original strand, 16322918 - 16322958
Alignment:
Q  369 cataagttgtttctataagctctcccaaacagtttcacaaa 409  Q
    ||||||||||||| |||| |||||| |||||||||||||||    
T  16322918 cataagttgtttcgataatctctccaaaacagtttcacaaa 16322958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 383 - 427
Target Start/End: Complemental strand, 39976196 - 39976152
Alignment:
Q  383 ataagctctcccaaacagtttcacaaagtttatgtcagtagataa 427  Q
    ||||| |||| ||||||||||||||||  ||||||||||||||||    
T  39976196 ataagttctctcaaacagtttcacaaaacttatgtcagtagataa 39976152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 2 - 52
Target Start/End: Complemental strand, 47563203 - 47563153
Alignment:
Q  2 gattagcctctgaagaagcgcgtgctagagctgctgaagccgctcagaaaa 52  Q
    ||||||||||||||||||| || |||||||||||||||||||| |||||||    
T  47563203 gattagcctctgaagaagcacgcgctagagctgctgaagccgcccagaaaa 47563153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 371 - 428
Target Start/End: Complemental strand, 24158515 - 24158457
Alignment:
Q  371 taagttgtttctataagctctcccaaacagtttcacaaagt--ttatgtcagtagataag 428  Q
    ||||||||||| |||||||||| ||||||||||||| ||||  |||||||||||||||||    
T  24158515 taagttgtttccataagctctcgcaaacagtttcac-aagtacttatgtcagtagataag 24158457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 370 - 427
Target Start/End: Complemental strand, 3775851 - 3775793
Alignment:
Q  370 ataagttgtttctataagctctcccaaacagtttcacaa-agtttatgtcagtagataa 427  Q
    |||||||||||||||||||||| ||||||||| | ||||  ||||||| ||||||||||    
T  3775851 ataagttgtttctataagctctgccaaacagtctaacaattgtttatgccagtagataa 3775793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 368 - 406
Target Start/End: Original strand, 37273202 - 37273240
Alignment:
Q  368 tcataagttgtttctataagctctcccaaacagtttcac 406  Q
    |||||||||||||| ||||||||||||||||||| ||||    
T  37273202 tcataagttgtttccataagctctcccaaacagtctcac 37273240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 364 - 406
Target Start/End: Complemental strand, 49772674 - 49772632
Alignment:
Q  364 catctcataagttgtttctataagctctcccaaacagtttcac 406  Q
    |||||||||||||||||| ||||||||||| ||||||| ||||    
T  49772674 catctcataagttgtttccataagctctcctaaacagtctcac 49772632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 368 - 405
Target Start/End: Complemental strand, 49845542 - 49845505
Alignment:
Q  368 tcataagttgtttctataagctctcccaaacagtttca 405  Q
    |||||||||||||| ||||||||||||||| |||||||    
T  49845542 tcataagttgtttccataagctctcccaaatagtttca 49845505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 368 - 428
Target Start/End: Original strand, 30443962 - 30444022
Alignment:
Q  368 tcataagttgtttctataagctctcccaaacagtttcacaaagtttatgtcagtagataag 428  Q
    ||||||| |||||  ||||||||| ||||||||| |||| || |||||| |||||||||||    
T  30443962 tcataagctgttttcataagctctaccaaacagtctcaccaaatttatgccagtagataag 30444022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 372 - 420
Target Start/End: Complemental strand, 35394757 - 35394709
Alignment:
Q  372 aagttgtttctataagctctcccaaacagtttcacaaagtttatgtcag 420  Q
    |||| ||||||||||| ||||||||||||| ||| ||| ||||||||||    
T  35394757 aagtagtttctataagttctcccaaacagtctcataaaatttatgtcag 35394709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 368 - 416
Target Start/End: Complemental strand, 46778192 - 46778144
Alignment:
Q  368 tcataagttgtttctataagctctcccaaacagtttcacaaagtttatg 416  Q
    |||||||||||||  ||||| |||||||||| |||||||||| ||||||    
T  46778192 tcataagttgttttcataagttctcccaaacggtttcacaaaatttatg 46778144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000003; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 368 - 428
Target Start/End: Complemental strand, 18628555 - 18628494
Alignment:
Q  368 tcataagttgtttctataagctctcccaaacagtttcacaa-agtttatgtcagtagataag 428  Q
    |||||||||||||  ||||||||||||||||||| ||||||  |||||||||||||||||||    
T  18628555 tcataagttgttttcataagctctcccaaacagtctcacaagtgtttatgtcagtagataag 18628494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 369 - 428
Target Start/End: Complemental strand, 25904223 - 25904164
Alignment:
Q  369 cataagttgtttctataagctctcccaaacagtttcacaaagtttatgtcagtagataag 428  Q
    |||||| |||||  ||||||||||||||||||| ||||||| ||||||||| | ||||||    
T  25904223 cataagctgttttcataagctctcccaaacagtctcacaaaatttatgtcattggataag 25904164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 368 - 409
Target Start/End: Complemental strand, 6987743 - 6987702
Alignment:
Q  368 tcataagttgtttctataagctctcccaaacagtttcacaaa 409  Q
    ||||||||||| || ||||||||||||||||||| |||||||    
T  6987743 tcataagttgtatccataagctctcccaaacagtctcacaaa 6987702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 376 - 408
Target Start/End: Original strand, 9316601 - 9316633
Alignment:
Q  376 tgtttctataagctctcccaaacagtttcacaa 408  Q
    |||||| ||||||||||||||||||||||||||    
T  9316601 tgtttccataagctctcccaaacagtttcacaa 9316633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 389 - 429
Target Start/End: Complemental strand, 15173283 - 15173243
Alignment:
Q  389 tctcccaaacagtttcacaaagtttatgtcagtagataagt 429  Q
    ||||||||||||| |||||||  ||||||||||||||||||    
T  15173283 tctcccaaacagtctcacaaaacttatgtcagtagataagt 15173243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 368 - 427
Target Start/End: Original strand, 25583660 - 25583720
Alignment:
Q  368 tcataagttgtttctataagctctcccaaacagtttcaca-aagtttatgtcagtagataa 427  Q
    |||||||||||||  |||||| |||||||||||| ||||| | ||||||||||| ||||||    
T  25583660 tcataagttgtttgcataagcgctcccaaacagtctcacacatgtttatgtcagaagataa 25583720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 368 - 408
Target Start/End: Original strand, 25717661 - 25717701
Alignment:
Q  368 tcataagttgtttctataagctctcccaaacagtttcacaa 408  Q
    |||||||||||||| ||||||||| ||||||| ||||||||    
T  25717661 tcataagttgtttccataagctcttccaaacaatttcacaa 25717701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 368 - 408
Target Start/End: Complemental strand, 27123354 - 27123314
Alignment:
Q  368 tcataagttgtttctataagctctcccaaacagtttcacaa 408  Q
    |||||||||||||| |||||||||| |||||||| ||||||    
T  27123354 tcataagttgtttccataagctctctcaaacagtctcacaa 27123314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 368 - 408
Target Start/End: Complemental strand, 41097258 - 41097218
Alignment:
Q  368 tcataagttgtttctataagctctcccaaacagtttcacaa 408  Q
    |||| |||||||||||||||||||||| |||||| ||||||    
T  41097258 tcattagttgtttctataagctctcccgaacagtctcacaa 41097218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 369 - 409
Target Start/End: Complemental strand, 48157121 - 48157081
Alignment:
Q  369 cataagttgtttctataagctctcccaaacagtttcacaaa 409  Q
    ||||||||||||||||||||||||||||||||| |||||||    
T  48157121 cataagttgtttctataagctctcccaaacagtctcacaaa 48157081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 376 - 429
Target Start/End: Original strand, 30751595 - 30751649
Alignment:
Q  376 tgtttctataagctctcccaaacagtttcacaa-agtttatgtcagtagataagt 429  Q
    ||||||||||||||||||||||||||  |||||  | ||||||||||||||||||    
T  30751595 tgtttctataagctctcccaaacagtcgcacaagtgcttatgtcagtagataagt 30751649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 376 - 422
Target Start/End: Original strand, 45593605 - 45593651
Alignment:
Q  376 tgtttctataagctctcccaaacagtttcacaaagtttatgtcagta 422  Q
    ||||| |||||| ||||||||||||| |||||||| |||||||||||    
T  45593605 tgtttttataagttctcccaaacagtctcacaaagcttatgtcagta 45593651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 369 - 429
Target Start/End: Complemental strand, 22387897 - 22387836
Alignment:
Q  369 cataagttgtttctataagctctcccaaacagtttcaca-aagtttatgtcagtagataagt 429  Q
    ||||||||||||  ||||||||||||||||||| |||||   ||||||||||||| ||||||    
T  22387897 cataagttgttttcataagctctcccaaacagtctcacacgtgtttatgtcagtaaataagt 22387836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 368 - 408
Target Start/End: Original strand, 4966224 - 4966264
Alignment:
Q  368 tcataagttgtttctataagctctcccaaacagtttcacaa 408  Q
    |||||||| ||||||||||||||||| ||||||| ||||||    
T  4966224 tcataagtggtttctataagctctcctaaacagtctcacaa 4966264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 368 - 427
Target Start/End: Original strand, 27857426 - 27857486
Alignment:
Q  368 tcataagttgtttctataagctctcccaaacagtttcacaa-agtttatgtcagtagataa 427  Q
    |||||||||||||  ||||||||||||||||||||||||||  || |||||||||||||||    
T  27857426 tcataagttgttttcataagctctcccaaacagtttcacaagtgtctatgtcagtagataa 27857486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 368 - 401
Target Start/End: Complemental strand, 2027800 - 2027767
Alignment:
Q  368 tcataagttgtttctataagctctcccaaacagt 401  Q
    ||||||||||||||||||||||||||||||||||    
T  2027800 tcataagttgtttctataagctctcccaaacagt 2027767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 368 - 428
Target Start/End: Original strand, 34939812 - 34939873
Alignment:
Q  368 tcataagttgtttctataagctctcccaaacagtttcacaaa-gtttatgtcagtagataag 428  Q
    ||||||| ||||||  |||||||||| ||||||||||||||| |||||||||| ||||||||    
T  34939812 tcataagctgtttccgtaagctctccaaaacagtttcacaaatgtttatgtcactagataag 34939873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 368 - 408
Target Start/End: Original strand, 24782259 - 24782299
Alignment:
Q  368 tcataagttgtttctataagctctcccaaacagtttcacaa 408  Q
    ||||||||||||||||||||||||| |||||| ||||||||    
T  24782259 tcataagttgtttctataagctctctcaaacaatttcacaa 24782299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 368 - 408
Target Start/End: Original strand, 32917265 - 32917305
Alignment:
Q  368 tcataagttgtttctataagctctcccaaacagtttcacaa 408  Q
    |||||||||||||| ||||||||||||||||||| ||||||    
T  32917265 tcataagttgtttccataagctctcccaaacagtctcacaa 32917305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 368 - 429
Target Start/End: Original strand, 32171535 - 32171597
Alignment:
Q  368 tcataagttgtttctataagctctcccaaacagtttcacaaa-gtttatgtcagtagataagt 429  Q
    ||||||||||||||  ||||||||||||| |||| ||||||| | ||||||||||| ||||||    
T  32171535 tcataagttgtttccttaagctctcccaaccagtctcacaaatgcttatgtcagtaaataagt 32171597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 368 - 408
Target Start/End: Complemental strand, 2460153 - 2460113
Alignment:
Q  368 tcataagttgtttctataagctctcccaaacagtttcacaa 408  Q
    |||||||||||||| |||||||||| |||||||| ||||||    
T  2460153 tcataagttgtttccataagctctctcaaacagtctcacaa 2460113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 368 - 408
Target Start/End: Original strand, 32976046 - 32976086
Alignment:
Q  368 tcataagttgtttctataagctctcccaaacagtttcacaa 408  Q
    ||||||| |||||||||||||||| ||||||||| ||||||    
T  32976046 tcataagctgtttctataagctcttccaaacagtctcacaa 32976086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 368 - 429
Target Start/End: Original strand, 15120251 - 15120313
Alignment:
Q  368 tcataagttgtttctataagctctcccaaacagtttcacaa-agtttatgtcagtagataagt 429  Q
    |||||||||||||| |||||||||||||||||| |||||||  |||||||  |||||||||||    
T  15120251 tcataagttgtttccataagctctcccaaacagattcacaactgtttatgctagtagataagt 15120313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 368 - 405
Target Start/End: Complemental strand, 39962301 - 39962264
Alignment:
Q  368 tcataagttgtttctataagctctcccaaacagtttca 405  Q
    |||||| |||||||||||||||||||||||||||||||    
T  39962301 tcataaattgtttctataagctctcccaaacagtttca 39962264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 368 - 408
Target Start/End: Original strand, 9996806 - 9996846
Alignment:
Q  368 tcataagttgtttctataagctctcccaaacagtttcacaa 408  Q
    ||||||||||||||||||||||||||||| |||| ||||||    
T  9996806 tcataagttgtttctataagctctcccaagcagtctcacaa 9996846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 370 - 429
Target Start/End: Original strand, 19243603 - 19243663
Alignment:
Q  370 ataagttgtttctataagctctcccaaacagtttcacaaa-gtttatgtcagtagataagt 429  Q
    ||||| ||||||||||||||| |||||||||| ||| ||| | ||||||||||||||||||    
T  19243603 ataagctgtttctataagctcgcccaaacagtctcagaaatgcttatgtcagtagataagt 19243663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 368 - 408
Target Start/End: Complemental strand, 29429759 - 29429719
Alignment:
Q  368 tcataagttgtttctataagctctcccaaacagtttcacaa 408  Q
    |||| ||||||||||||||||||||||||||||| ||||||    
T  29429759 tcattagttgtttctataagctctcccaaacagtctcacaa 29429719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 368 - 401
Target Start/End: Original strand, 4550815 - 4550848
Alignment:
Q  368 tcataagttgtttctataagctctcccaaacagt 401  Q
    |||||||||||||| |||||||||||||||||||    
T  4550815 tcataagttgtttccataagctctcccaaacagt 4550848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 368 - 428
Target Start/End: Complemental strand, 27237895 - 27237834
Alignment:
Q  368 tcataagttgtttctataagctctcccaaacagtttcac-aaagtttatgtcagtagataag 428  Q
    ||||||| |||||||||||| ||| |||||||||||||| |  ||||||||||| |||||||    
T  27237895 tcataagctgtttctataagttctaccaaacagtttcactagtgtttatgtcagcagataag 27237834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 383 - 428
Target Start/End: Original strand, 30331835 - 30331880
Alignment:
Q  383 ataagctctcccaaacagtttcacaaagtttatgtcagtagataag 428  Q
    ||||| ||||||||||||| |||||||  |||||||||||||||||    
T  30331835 ataagttctcccaaacagtctcacaaaacttatgtcagtagataag 30331880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 368 - 400
Target Start/End: Original strand, 18884935 - 18884967
Alignment:
Q  368 tcataagttgtttctataagctctcccaaacag 400  Q
    ||||||| |||||||||||||||||||||||||    
T  18884935 tcataagctgtttctataagctctcccaaacag 18884967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 368 - 427
Target Start/End: Original strand, 43985277 - 43985337
Alignment:
Q  368 tcataagttgtttctataagctctcccaaacagtttcacaa-agtttatgtcagtagataa 427  Q
    ||||||||||||||  ||| ||||| |||||||||| ||||  ||||||||||||||||||    
T  43985277 tcataagttgtttcagtaatctctctcaaacagttttacaagtgtttatgtcagtagataa 43985337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000006; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 383 - 428
Target Start/End: Original strand, 15015927 - 15015972
Alignment:
Q  383 ataagctctcccaaacagtttcacaaagtttatgtcagtagataag 428  Q
    ||||| ||||||||||||| |||||||| |||||||||||||||||    
T  15015927 ataagttctcccaaacagtctcacaaagcttatgtcagtagataag 15015972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 368 - 409
Target Start/End: Complemental strand, 28586768 - 28586727
Alignment:
Q  368 tcataagttgtttctataagctctcccaaacagtttcacaaa 409  Q
    ||||||| | |||| |||||||||||||||||||||||||||    
T  28586768 tcataagctatttccataagctctcccaaacagtttcacaaa 28586727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 368 - 401
Target Start/End: Complemental strand, 38047881 - 38047848
Alignment:
Q  368 tcataagttgtttctataagctctcccaaacagt 401  Q
    |||||||||||||| |||||||||||||||||||    
T  38047881 tcataagttgtttccataagctctcccaaacagt 38047848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 368 - 401
Target Start/End: Complemental strand, 30191143 - 30191110
Alignment:
Q  368 tcataagttgtttctataagctctcccaaacagt 401  Q
    |||||||||||||| |||||||||||||||||||    
T  30191143 tcataagttgtttccataagctctcccaaacagt 30191110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 368 - 409
Target Start/End: Complemental strand, 39551211 - 39551170
Alignment:
Q  368 tcataagttgtttctataagctctcccaaacagtttcacaaa 409  Q
    |||||||||||||| ||||  |||||||||||||||||||||    
T  39551211 tcataagttgtttccataaattctcccaaacagtttcacaaa 39551170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 368 - 401
Target Start/End: Complemental strand, 43393774 - 43393741
Alignment:
Q  368 tcataagttgtttctataagctctcccaaacagt 401  Q
    ||||||||||| ||||||||||||||||||||||    
T  43393774 tcataagttgtatctataagctctcccaaacagt 43393741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 368 - 408
Target Start/End: Complemental strand, 4055618 - 4055578
Alignment:
Q  368 tcataagttgtttctataagctctcccaaacagtttcacaa 408  Q
    ||||||||| ||||||||| |||||||||||||||| ||||    
T  4055618 tcataagttatttctataaactctcccaaacagttttacaa 4055578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 368 - 427
Target Start/End: Original strand, 6950390 - 6950450
Alignment:
Q  368 tcataagttgtttctataagctctcccaaacagtttcacaaa-gtttatgtcagtagataa 427  Q
    ||||| |||||||  ||||||||||||||||| | ||||||| ||||||| ||||||||||    
T  6950390 tcataggttgtttacataagctctcccaaacaatctcacaaatgtttatgccagtagataa 6950450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 370 - 429
Target Start/End: Complemental strand, 7918781 - 7918721
Alignment:
Q  370 ataagttgtttctataagctctcccaaacagtttcacaa-agtttatgtcagtagataagt 429  Q
    |||||||||||  ||||||||||||||||||| ||||||  |||||||  |||||||||||    
T  7918781 ataagttgttttcataagctctcccaaacagtctcacaagtgtttatgctagtagataagt 7918721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 369 - 401
Target Start/End: Original strand, 29699342 - 29699374
Alignment:
Q  369 cataagttgtttctataagctctcccaaacagt 401  Q
    ||||||||||||||||||| |||||||||||||    
T  29699342 cataagttgtttctataagttctcccaaacagt 29699374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 383 - 427
Target Start/End: Original strand, 38648435 - 38648479
Alignment:
Q  383 ataagctctcccaaacagtttcacaaagtttatgtcagtagataa 427  Q
    ||||| ||||||||||||| |||||||  ||||||||||||||||    
T  38648435 ataaggtctcccaaacagtctcacaaaacttatgtcagtagataa 38648479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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