View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7117_high_6 (Length: 417)
Name: NF7117_high_6
Description: NF7117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7117_high_6 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 386; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 24 - 409
Target Start/End: Original strand, 39539857 - 39540242
Alignment:
| Q |
24 |
agaaaattattaacggatataatggacaaaccttccatgcttttgcagcaaagatcgacgaatcgactgagtaggatgagcagttaggaccaaatcaaca |
123 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39539857 |
agaaaattattaacggatataatggacaaaccttccatgcttttgcagcaaagatcgacgaatcgactgagtaggatgagcagttaggaccaaatcaaca |
39539956 |
T |
|
| Q |
124 |
gtttgactcttcaaagcatcaaagacttccagaggagtcttcttgagttcagtcacaagcttcttgaatgtctcttcaatatctgactcagttatggcag |
223 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39539957 |
gtttgactcttcaaagcatcaaagacttccagaggagtcttcttgagttcagtcacaagcttcttgaatgtctcttcaatatctgactcagttatggcag |
39540056 |
T |
|
| Q |
224 |
aattttcatcagcaaaatcacctttcttcagtaacttgatccttcttctatatgcaatttgaacttcttcagccaagtttgccaaattaagcatgtggga |
323 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39540057 |
aattttcatcagcaaaatcacctttcttcagtaacttgatccttcttctatatgcaatttgaacttcttcagccaagtttgccaaattaagcatgtggga |
39540156 |
T |
|
| Q |
324 |
aaatgatttagctataacaatagaatctccagcatcaagaccagttagcatattcccaagttcctccaatttctctggcctatgct |
409 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39540157 |
aaatgatttagctataacaatagaatctccagcatcaagaccagttagcatattcccaagttcctccaatttctctggcctatgct |
39540242 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 49 - 160
Target Start/End: Complemental strand, 32095293 - 32095182
Alignment:
| Q |
49 |
acaaaccttccatgcttttgcagcaaagatcgacgaatcgactgagtaggatgagcagttaggaccaaatcaacagtttgactcttcaaagcatcaaaga |
148 |
Q |
| |
|
||||||||||| |||||||| |||||||||||||||| ||||||||||||||||||||| || || | |||||| || || ||||||| |||||||| | |
|
|
| T |
32095293 |
acaaaccttccgtgcttttgaagcaaagatcgacgaaccgactgagtaggatgagcagtaagaacaagatcaacggtctggttcttcaatgcatcaaaaa |
32095194 |
T |
|
| Q |
149 |
cttccagaggag |
160 |
Q |
| |
|
||||| |||||| |
|
|
| T |
32095193 |
cttcctgaggag |
32095182 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 166; Significance: 1e-88; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 48 - 397
Target Start/End: Original strand, 30910318 - 30910667
Alignment:
| Q |
48 |
gacaaaccttccatgcttttgcagcaaagatcgacgaatcgactgagtaggatgagcagttaggaccaaatcaacagtttgactcttcaaagcatcaaag |
147 |
Q |
| |
|
|||||||||||| ||||| |||| |||||||| |||| ||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
30910318 |
gacaaaccttccgtgcttctgcaacaaagatctgcgaacagactgggtaggatgagcagttaggaccaaatcaacagtttggctcttcaaagcatcaaag |
30910417 |
T |
|
| Q |
148 |
acttccagaggagtcttcttgagttcagtcacaagcttcttgaatgtctcttcaatatctgactcagttatggcagaattttcatcagcaaaatcacctt |
247 |
Q |
| |
|
||||| ||||| |||||||| |||| | |||||||| ||||||| ||||||||||| ||||||||||| |||||||| || |||||| ||||||| || | |
|
|
| T |
30910418 |
acttcaagaggggtcttcttcagttgattcacaagcctcttgaaggtctcttcaatgtctgactcagtgatggcagagttctcatcaccaaaatccccct |
30910517 |
T |
|
| Q |
248 |
tcttcagtaacttgatccttcttctatatgcaatttgaacttcttcagccaagtttgccaaattaagcatgtgggaaaatgatttagctataacaataga |
347 |
Q |
| |
|
|||| | |||||| |||||||| | || ||||||||||||||||| ||||| || ||||| ||||||||||| ||||| || || || || |||||||| |
|
|
| T |
30910518 |
tctttaataacttaatccttctgcggtaggcaatttgaacttcttctgccaaattggccaagttaagcatgtgagaaaaagacttggcaatgacaataga |
30910617 |
T |
|
| Q |
348 |
atctccagcatcaagaccagttagcatattcccaagttcctccaatttct |
397 |
Q |
| |
|
||| |||||||||||||| || ||||| ||||| ||||||||||| |||| |
|
|
| T |
30910618 |
atccccagcatcaagaccggtcagcatgttcccgagttcctccaacttct |
30910667 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 277 - 359
Target Start/End: Complemental strand, 22565024 - 22564942
Alignment:
| Q |
277 |
gcaatttgaacttcttcagccaagtttgccaaattaagcatgtgggaaaatgatttagctataacaatagaatctccagcatc |
359 |
Q |
| |
|
|||||||| || || ||||| ||||| ||||| |||||||| || ||||| ||||| || | ||||||||||||||||||||| |
|
|
| T |
22565024 |
gcaatttggacctcctcagctaagttagccaagttaagcatatgagaaaaggatttggcaacaacaatagaatctccagcatc |
22564942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University