View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7117_low_10 (Length: 391)
Name: NF7117_low_10
Description: NF7117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7117_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 1 - 319
Target Start/End: Original strand, 18959757 - 18960075
Alignment:
| Q |
1 |
tatatcatcaaacttaatttttgttgaagattctcacattgattgagagattatctaaataattaagtgtttatacgtgaagacaatcatcgtctcacaa |
100 |
Q |
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| T |
18959757 |
tatatcatcaaacttaatttttgttgaagagtctcacattgattgagagatgatttgaataattaagtgtttataagtgaaggcaatcatcgtctcacaa |
18959856 |
T |
|
| Q |
101 |
gtcggtattaagagttgtcttaagtctaaatacataaactaagattgtttaccaagtgttgagaaacaatcttacacgtgtttaccaaatggacccactg |
200 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
18959857 |
gtcggtattaagagttgtcttaagtctaaccacataaactaagattgtttaccaagtgttgagaaacaatcttacacgtgtttaccaagtggacccactg |
18959956 |
T |
|
| Q |
201 |
ccctccgatgagaaaaaatttcgaaaaaccgtgtttcatcttcaatttgtccctcctatattgccatgttaggtctaactacatattctaagacaatatc |
300 |
Q |
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||||||||||||||||||||||| |||||||||||||| || ||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
18959957 |
tcctccgatgagaaaaaatttcgacaaaccgtgtttcatttttgatttgcccctcctatattgccatgttaggcctaactacatattctaagacaatatc |
18960056 |
T |
|
| Q |
301 |
tacagcctgttgagatatg |
319 |
Q |
| |
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||||||||||||||||||| |
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| T |
18960057 |
tacagcctgttgagatatg |
18960075 |
T |
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