View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7117_low_15 (Length: 336)
Name: NF7117_low_15
Description: NF7117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7117_low_15 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 314; Significance: 1e-177; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 1 - 318
Target Start/End: Original strand, 8820221 - 8820538
Alignment:
| Q |
1 |
agatatcaaatgccaagagataaacagctactgtaactgcaatcaagttaaacacattgaagaactgcgtctctttattttcttctgtggaagttgaagc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8820221 |
agatatcaaatgccaagagataaacagctactgtaactgcaatcaagttaaacacattgaagaactgcgtctctttattttcttctgtggaagttgaagc |
8820320 |
T |
|
| Q |
101 |
tggtggagtttcatgaaggaaaatagcagcaatgagacaaatgatggcaggaacaattgtgagcattaatagaaacttcgatgggtctgaggaaaataaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8820321 |
tggtggagtttcatgaaggaaaatagcagcaatgagacaaatgatggcaggaacaattgtgagcattaatagaaacttcgatgggtctgaggaaaataaa |
8820420 |
T |
|
| Q |
201 |
gctgtgcatatgtcagtgaagattgctgtgctgagtcctacataaccctttagaatgccggaaattggaccacggttttttggaaagtttctcatgcaag |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
8820421 |
gctgtgcatatgtcagtgaagattgctgtgctgagtcctacataaccctttagaatgccggaaattggaccacgattttttggaaagtttctcatgcaag |
8820520 |
T |
|
| Q |
301 |
ttacaagtactgctgtgt |
318 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
8820521 |
ttacaagtactgctgtgt |
8820538 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University