View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7117_low_17 (Length: 309)

Name: NF7117_low_17
Description: NF7117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7117_low_17
NF7117_low_17
[»] chr3 (1 HSPs)
chr3 (1-293)||(36264215-36264505)


Alignment Details
Target: chr3 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 1 - 293
Target Start/End: Complemental strand, 36264505 - 36264215
Alignment:
Q  1 taaattgtattaatttaagggtacaattaaaaaatatcaaataaacaaaagtgacaattttttgggacaatcttcttcttttacaaatatgacaattatt 100  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36264505 taaattgtattaatttaaaggtacaattaaaaaatatcaaataaacaaaagtgacaattttttgggacaatcttcttcttttacaaatatgacaattatt 36264406  T
Q  101 atgggatagaaatagaaggagtatatcacattggaccacaatgctatgtctagcaaacgtgcttgacgggttgggagaagaaac-nnnnnnnggtacaca 199  Q
    |||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||    
T  36264405 atgggatagaaat---aggagtatatcacattggaccacaatgctatgtctagcaaacgtgcttgacgggttgggagaagaaacaaaaaaaaggtacaca 36264309  T
Q  200 aacgtaatgaaaggggcacttctcagtattaaagcacataccaaccatagttttacctcaacttcaatgagaatcatggttacattattcagtg 293  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36264308 aacgtaatgaaaggggcacttctcagtatcaaagcacataccaaccatagttttacctcaacttcaatgagaatcatggttacattattcagtg 36264215  T

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