View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7117_low_18 (Length: 309)
Name: NF7117_low_18
Description: NF7117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7117_low_18 |
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| [»] scaffold0517 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 251; Significance: 1e-139; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 22 - 296
Target Start/End: Original strand, 24426344 - 24426618
Alignment:
| Q |
22 |
atcttcatcttcatcaattcatccaaatccaaattgaaattcgggaaaatggtgtgggtttaaacccagatcttcatcttctattttgatattcgtttat |
121 |
Q |
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| T |
24426344 |
atcttcatcttcatcaattcatccaaatccaaattgaaattctggaaaatggtgtgggtttaaacccatatcttcatcttctattttgatattcatttct |
24426443 |
T |
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| Q |
122 |
gcttctaggtgtgttttgttcgatttgtttcttgtttcctcttcaatacactatctggttttctgatcgatctggacagtgatgcttgttattgagtttg |
221 |
Q |
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|||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24426444 |
gcttctgggtgtgttttgttcaatttgtttcttgtttcctcttcaatacactatctggttttctgatcgatctggacagtgatgcttgttattgagtttg |
24426543 |
T |
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| Q |
222 |
atcatcaaattcatcatcttcatcccccaattcatttctcagatgtgtaattactaccctttacaccattcatct |
296 |
Q |
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| T |
24426544 |
atcatcaaattcatcatcttcatcccccaattcatttctcagatgtgtaattactaccctttacaccattcatct |
24426618 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 135 - 211
Target Start/End: Complemental strand, 37396217 - 37396141
Alignment:
| Q |
135 |
ttttgttcgatttgtttcttgtttcctcttcaatacactatctggttttctgatcgatctggacagtgatgcttgtt |
211 |
Q |
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| T |
37396217 |
ttttgttcgatctatttcttgtttcctcttcaatatacgatttggttttctgttcaatctggttagtgttgcttgtt |
37396141 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 138 - 211
Target Start/End: Complemental strand, 34934105 - 34934032
Alignment:
| Q |
138 |
tgttcgatttgtttcttgtttcctcttcaatacactatctggttttctgatcgatctggacagtgatgcttgtt |
211 |
Q |
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| T |
34934105 |
tgttcgatctatttattgtttcctcttcaatatacgatttggttttctgttcaatctggttagtgttgcttgtt |
34934032 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 84; Significance: 6e-40; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 22 - 287
Target Start/End: Original strand, 31488985 - 31489240
Alignment:
| Q |
22 |
atcttcatcttcatcaattcatccaaatccaaattgaaattcgggaaaatggtgtgggtttaaac-ccagatc----ttcatc------ttctattttga |
110 |
Q |
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| T |
31488985 |
atcttcatcttcatcaattcatccaaatccaaattgaaattctggtaactggtgtgggtcgaaaatccagatcgaaattcatccaaatcttctattttga |
31489084 |
T |
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| Q |
111 |
tattcgtttatgcttctaggtgtgttttgttcgatttgtttcttgtttcctcttcaatacactatctggttttctgatcgatctggacagtgatgcttgt |
210 |
Q |
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| T |
31489085 |
tatttgtttctgcttctcggtgtgtttt------------tcttgtttcctcttcaatacactatttggttttctaatcaatttggattgtgatgcttgt |
31489172 |
T |
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| Q |
211 |
tattgagtttgatcatcaaattcatcatcttcatcccccaattcatttctcagatgtgtaattactaccctttacac |
287 |
Q |
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| T |
31489173 |
tattgagttcgatcttcaaa---------ttcatcccccaattcatttctcagatatgtaattactaccctttacac |
31489240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 138 - 211
Target Start/End: Complemental strand, 32197263 - 32197190
Alignment:
| Q |
138 |
tgttcgatttgtttcttgtttcctcttcaatacactatctggttttctgatcgatctggacagtgatgcttgtt |
211 |
Q |
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| T |
32197263 |
tgttcgatctatttcttgtttcctcttcaatatacgatttggttttctgttcaatctggttagtgttgcttgtt |
32197190 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0517 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0517
Description:
Target: scaffold0517; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 135 - 211
Target Start/End: Original strand, 10997 - 11073
Alignment:
| Q |
135 |
ttttgttcgatttgtttcttgtttcctcttcaatacactatctggttttctgatcgatctggacagtgatgcttgtt |
211 |
Q |
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||||||||||| | ||||||||||||||||||||| || || |||||||||| || |||||| |||| |||||||| |
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| T |
10997 |
ttttgttcgatctatttcttgtttcctcttcaatatacgatttggttttctgttcaatctggttagtgttgcttgtt |
11073 |
T |
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