View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7117_low_2 (Length: 538)
Name: NF7117_low_2
Description: NF7117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7117_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 438; Significance: 0; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 438; E-Value: 0
Query Start/End: Original strand, 24 - 525
Target Start/End: Original strand, 34990497 - 34990998
Alignment:
| Q |
24 |
tgatccacttgaaatatttaagcttcaagaatatatccggaaaatacctatgcatttccaatagatccagaaaattccaatatgcatttcccaaatggat |
123 |
Q |
| |
|
||||||||||||||||| ||||||| ||||||| |||||||||||||||||||||||||||||||||| |||||| | ||||||||||||||||||||| |
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| T |
34990497 |
tgatccacttgaaatatctaagcttgaagaatagatccggaaaatacctatgcatttccaatagatcccgaaaatacacatatgcatttcccaaatggat |
34990596 |
T |
|
| Q |
124 |
tggtattctcctaaatcttgagtccttggatctaagagctgcttatggttttatcattataacaaaggagattatcaagcttagacagctacgccatctt |
223 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||| |||||||||||| ||||||||||||||||||||||||| |
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|
| T |
34990597 |
tggtattctcctaaatcttgagaccttggatctaagagctgcttttggttttatcattataccaaaggagattagcaagcttagacagctacgccatctt |
34990696 |
T |
|
| Q |
224 |
atgggttgcaggatgtctttgtttcatttgaaggatgttattggatgcatggaatctctacaaacgttgagtggagtgaaaattggtaagggtggaatag |
323 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
34990697 |
ataggttgcaggatgtctttgtttcatttgaaggatgttattggatgcatggaatctctacaaacgttgagtggagtgaaaattggtaagggtggaatag |
34990796 |
T |
|
| Q |
324 |
agttgattaaggagttgggaaagctaaggcggttaaggaagttgagcttgactgatgtgagggcaagacattcaagcgctttatcttcctcactgaatga |
423 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
34990797 |
agttgattaaggagttgggaaagctaaggcggttaaggaagttgagcttgaatgatgtgagggcaagacattcaagcgctttatcttcctcactgaatga |
34990896 |
T |
|
| Q |
424 |
gatgcgacacttggagaaattacgcattttgtcaagtagtggagatgatatggttcatgatgtcattgatatgcatttggtttcacctccactacctatg |
523 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
34990897 |
gatgcgacacttggagaaattacgcattgtgtcaagtagcggatatgatatggttcatgatgtcattgatatgcatttggtttcacctccactacctatg |
34990996 |
T |
|
| Q |
524 |
ct |
525 |
Q |
| |
|
|| |
|
|
| T |
34990997 |
ct |
34990998 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 193; E-Value: 1e-104
Query Start/End: Original strand, 111 - 507
Target Start/End: Complemental strand, 2304617 - 2304221
Alignment:
| Q |
111 |
ttcccaaatggattggtattctcctaaatcttgagtccttggatctaagagctgcttatggttttatcattataacaaaggagattatcaagcttagaca |
210 |
Q |
| |
|
||||||||||||||||| |||| |||||||| ||| ||||||||||||| | ||| | |||||| ||||||| |||||||||||| |||||||||| | |
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|
| T |
2304617 |
ttcccaaatggattggtcttcttctaaatctggagaccttggatctaaggagttcttcttgttttaccattataccaaaggagattagcaagcttagaaa |
2304518 |
T |
|
| Q |
211 |
gctacgccatcttatgggttgcaggatgtctttgtttcatttgaaggatgttattggatgcatggaatctctacaaacgttgagtggagtgaaaattggt |
310 |
Q |
| |
|
|||| ||||||||||||| | || || | ||||||||| |||||||||||||| ||| ||||||||||||||||||| |||| |||| ||||||||||| |
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|
| T |
2304517 |
gctatgccatcttatgggctacaatatctgtttgtttcaattgaaggatgttataggaggcatggaatctctacaaacattgactggaatgaaaattggt |
2304418 |
T |
|
| Q |
311 |
aagggtggaatagagttgattaaggagttgggaaagctaaggcggttaaggaagttgagcttgactgatgtgagggcaagacattcaagcgctttatctt |
410 |
Q |
| |
|
||||||||||||||||| ||||| ||||||||||||||||||| |||||||||||| |||||| |||||||||| | |||||||| ||||||||||| |
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|
| T |
2304417 |
aagggtggaatagagttaattaaagagttgggaaagctaaggcagttaaggaagtttagcttgtttgatgtgaggctagaacattcaatcgctttatctt |
2304318 |
T |
|
| Q |
411 |
cctcactgaatgagatgcgacacttggagaaattacgcattttgtcaagtagtggagatgatatggttcatgatgtcattgatatgcatttggtttc |
507 |
Q |
| |
|
|||| |||||||||||||||||| |||||||||| ||||| ||||||| || ||||||||| |||| ||||||||||||| | ||||||||||| |
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|
| T |
2304317 |
cctcgttgaatgagatgcgacactcggagaaattatgcattatgtcaagaagcggagatgatggggtttttgatgtcattgatttacatttggtttc |
2304221 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 110 - 515
Target Start/End: Original strand, 34976707 - 34977112
Alignment:
| Q |
110 |
tttcccaaatggattggtattctcctaaatcttgagtccttggatctaagagctgcttatggttttatcattataacaaaggagattatcaagcttagac |
209 |
Q |
| |
|
||||||||||||||||||||||||| |||||| ||| | ||||||||||| ||| ||| | | ||| | ||||| |||||||||||| |||||||||| |
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|
| T |
34976707 |
tttcccaaatggattggtattctccaaaatctggagactttggatctaagggcttcttttcctcttaccgttataccaaaggagattagcaagcttagaa |
34976806 |
T |
|
| Q |
210 |
agctacgccatcttatgggttgcaggatgtctttgtttcatttgaaggatgttattggatgcatggaatctctacaaacgttgagtggagtgaaaattgg |
309 |
Q |
| |
|
||||||||||||||||||| || || || | || |||| ||||||||||| | ||||||||||||||| ||||||| |||| |||||||||||||| |
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|
| T |
34976807 |
agctacgccatcttatgggcaacaagaggtgtatgcttcaattgaaggatgtgttaggatgcatggaatctttacaaacattgaccggagtgaaaattgg |
34976906 |
T |
|
| Q |
310 |
taagggtggaatagagttgattaaggagttgggaaagctaaggcggttaaggaagttgagcttgactgatgtgagggcaagacattcaagcgctttatct |
409 |
Q |
| |
|
||||| |||||||||||| ||||| |||||||||||| | || | ||||||||||||||||||| | |||| |||||| ||||||||||||| ||| | |
|
|
| T |
34976907 |
taaggatggaatagagttaattaaagagttgggaaagttcagacagttaaggaagttgagcttgttttatgtaagggcagaacattcaagcgctctatat |
34977006 |
T |
|
| Q |
410 |
tcctcactgaatgagatgcgacacttggagaaattacgcattttgtcaagtagtggagatgatatggttcatgatgtcattgatatgcatttggtttcac |
509 |
Q |
| |
|
|||||||||||||||||| |||||||||||| ||| |||| ||||| | | ||||| |||| | | ||||||||||||| | |||||||||| | |
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|
| T |
34977007 |
tcctcactgaatgagatgaaacacttggagaatttatacattgtgtcaggaatgggagacaatatagattttgatgtcattgatttagatttggtttcgc |
34977106 |
T |
|
| Q |
510 |
ctccac |
515 |
Q |
| |
|
|||||| |
|
|
| T |
34977107 |
ctccac |
34977112 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 128; E-Value: 6e-66
Query Start/End: Original strand, 242 - 457
Target Start/End: Original strand, 34983886 - 34984101
Alignment:
| Q |
242 |
ttgtttcatttgaaggatgttattggatgcatggaatctctacaaacgttgagtggagtgaaaattggtaagggtggaatagagttgattaaggagttgg |
341 |
Q |
| |
|
|||||||| |||||||||||||| ||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| ||||||| |
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|
| T |
34983886 |
ttgtttcaattgaaggatgttataggaggcatggaatctctacaaacattgagtggagtgaaaattggtaagggtggaatagagttaattaaagagttgg |
34983985 |
T |
|
| Q |
342 |
gaaagctaaggcggttaaggaagttgagcttgactgatgtgagggcaagacattcaagcgctttatcttcctcactgaatgagatgcgacacttggagaa |
441 |
Q |
| |
|
|||||||||| | |||||||||||||| |||| | ||| ||||||| ||||| |||||||||||||||||| ||||||||||||||||||| || || |
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|
| T |
34983986 |
gaaagctaagacagttaaggaagttgaccttgttttatgcgagggcagaacattttagcgctttatcttcctcattgaatgagatgcgacacttagaaaa |
34984085 |
T |
|
| Q |
442 |
attacgcattttgtca |
457 |
Q |
| |
|
|||| ||||| ||||| |
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|
| T |
34984086 |
attatgcattgtgtca |
34984101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 100 - 159
Target Start/End: Original strand, 34983805 - 34983864
Alignment:
| Q |
100 |
ccaatatgcatttcccaaatggattggtattctcctaaatcttgagtccttggatctaag |
159 |
Q |
| |
|
|||| ||| ||||||||||||||||||||||||||||||||| ||| ||||||||||||| |
|
|
| T |
34983805 |
ccaacatggatttcccaaatggattggtattctcctaaatctggagaccttggatctaag |
34983864 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 24 - 55
Target Start/End: Original strand, 34983756 - 34983787
Alignment:
| Q |
24 |
tgatccacttgaaatatttaagcttcaagaat |
55 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
34983756 |
tgatccacttgaaatatttaagcttcaagaat |
34983787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 61
Target Start/End: Original strand, 34976648 - 34976685
Alignment:
| Q |
24 |
tgatccacttgaaatatttaagcttcaagaatatatcc |
61 |
Q |
| |
|
|||||||||||||||||||||||||||| ||| ||||| |
|
|
| T |
34976648 |
tgatccacttgaaatatttaagcttcaaaaatttatcc |
34976685 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 177; Significance: 4e-95; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 177; E-Value: 4e-95
Query Start/End: Original strand, 111 - 515
Target Start/End: Original strand, 40581265 - 40581669
Alignment:
| Q |
111 |
ttcccaaatggattggtattctcctaaatcttgagtccttggatctaagagctgcttatggttttatcattataacaaaggagattatcaagcttagaca |
210 |
Q |
| |
|
||||||||||||||||| ||||||||||||| ||| ||||||||||||| ||| ||||| || || | ||||| ||||||| |||| ||| |||||| | |
|
|
| T |
40581265 |
ttcccaaatggattggtcttctcctaaatctggagaccttggatctaagggcttcttattattgtagcgttataccaaaggacattagcaaacttagaaa |
40581364 |
T |
|
| Q |
211 |
gctacgccatcttatgggttgcaggatgtctttgtttcatttgaaggatgttattggatgcatggaatctctacaaacgttgagtggagtgaaaattggt |
310 |
Q |
| |
|
|||||||||||||||||| | || ||||| ||||| | | | |||||||||||| ||||||||||||||||||||||| ||||||| ||||||||||||| |
|
|
| T |
40581365 |
gctacgccatcttatgggctacaagatgtgtttgtctaaatggaaggatgttataggatgcatggaatctctacaaacattgagtgcagtgaaaattggt |
40581464 |
T |
|
| Q |
311 |
aagggtggaatagagttgattaaggagttgggaaagctaaggcggttaaggaagttgagcttgactgatgtgagggcaagacattcaagcgctttatctt |
410 |
Q |
| |
|
||||||||||||||||| ||||| |||||| |||||||||||| |||||||||||||| |||| | ||| ||||||| ||||| ||||||||||||| |
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|
| T |
40581465 |
aagggtggaatagagttaattaaagagttgagaaagctaaggcagttaaggaagttgaacttgttttatgcgagggcagaacattttagcgctttatctt |
40581564 |
T |
|
| Q |
411 |
cctcactgaatgagatgcgacacttggagaaattacgcattttgtcaagtagtggagatgatatggttcatgatgtcattgatatgcatttggtttcacc |
510 |
Q |
| |
|
||||| |||||||||||||||||||| | |||||| ||||| | ||| | | ||| | ||| | ||| |||||||||||||| | ||||||||||| || |
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|
| T |
40581565 |
cctcattgaatgagatgcgacacttgaaaaaattaagcattgtatcaggatggggacaagattttgtttatgatgtcattgatttacatttggtttcgcc |
40581664 |
T |
|
| Q |
511 |
tccac |
515 |
Q |
| |
|
||||| |
|
|
| T |
40581665 |
tccac |
40581669 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 44; Significance: 8e-16; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 316 - 451
Target Start/End: Complemental strand, 22619814 - 22619679
Alignment:
| Q |
316 |
tggaatagagttgattaaggagttgggaaagctaaggcggttaaggaagttgagcttgactgatgtgagggcaagacattcaagcgctttatcttcctca |
415 |
Q |
| |
|
|||||||||||| |||||||||||||||||| | |||| ||||||||| ||| | ||| || ||| || | |||| |||||||||||||||| | |
|
|
| T |
22619814 |
tggaatagagttaattaaggagttgggaaagttgaggcagttaaggaaattgggtttggttggtgttagaagagaacatggaagcgctttatcttccgta |
22619715 |
T |
|
| Q |
416 |
ctgaatgagatgcgacacttggagaaattacgcatt |
451 |
Q |
| |
|
|||||||| ||||||||||||||||| |||||||| |
|
|
| T |
22619714 |
ttgaatgagctgcgacacttggagaaactacgcatt |
22619679 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 236 - 288
Target Start/End: Complemental strand, 22466973 - 22466921
Alignment:
| Q |
236 |
atgtctttgtttcatttgaaggatgttattggatgcatggaatctctacaaac |
288 |
Q |
| |
|
||||||||| |||| |||||||||| ||||||| ||||| |||||||||||| |
|
|
| T |
22466973 |
atgtctttgattcagttgaaggatggtattggaggcatgacatctctacaaac |
22466921 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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