View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7117_low_27 (Length: 256)
Name: NF7117_low_27
Description: NF7117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7117_low_27 |
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Alignment Details
Target: chr3 (Bit Score: 74; Significance: 5e-34; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 16 - 97
Target Start/End: Original strand, 53077609 - 53077690
Alignment:
| Q |
16 |
gaaacttcatattatcatgctctttggccgaaaccaaagcattaagccattaacgcaaaaagaataaaatcaagtccatgta |
97 |
Q |
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| T |
53077609 |
gaaacttcaaattatcatgctctttggccgaaactaaagcattaagccattaacgcaaaaagaataaaatcaagtccatgta |
53077690 |
T |
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Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 95 - 134
Target Start/End: Original strand, 53078496 - 53078535
Alignment:
| Q |
95 |
gtaatttggaaagaaattccaatttaaatagctcctccgg |
134 |
Q |
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| T |
53078496 |
gtaatttggaaagaaattccaatttaaatagctcctccgg |
53078535 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 205 - 250
Target Start/End: Original strand, 1116724 - 1116769
Alignment:
| Q |
205 |
acctacacactccaacaattctgcgcctcacaaccattcatctctc |
250 |
Q |
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| T |
1116724 |
acctacacactccaacaattctgcgcctcacaaccattcatctctc |
1116769 |
T |
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