View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7117_low_29 (Length: 252)

Name: NF7117_low_29
Description: NF7117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7117_low_29
NF7117_low_29
[»] chr6 (3 HSPs)
chr6 (113-251)||(12425733-12425873)
chr6 (208-250)||(32406993-32407035)
chr6 (72-109)||(12425923-12425960)
[»] chr5 (3 HSPs)
chr5 (207-250)||(33408169-33408212)
chr5 (180-252)||(42042148-42042220)
chr5 (211-244)||(6424037-6424070)
[»] chr8 (1 HSPs)
chr8 (192-250)||(30525268-30525326)
[»] chr4 (2 HSPs)
chr4 (192-250)||(54137261-54137319)
chr4 (182-244)||(582290-582352)
[»] chr3 (2 HSPs)
chr3 (210-251)||(20490964-20491005)
chr3 (179-243)||(22312323-22312387)
[»] chr2 (1 HSPs)
chr2 (179-227)||(36201980-36202028)


Alignment Details
Target: chr6 (Bit Score: 96; Significance: 4e-47; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 113 - 251
Target Start/End: Complemental strand, 12425873 - 12425733
Alignment:
Q  113 cataatatatgcaaggattgaggtttgaactctggacacnnnnnnnnnn--gtcttttggtttcaggttccaatttccactttgcaatactcaactcgac 210  Q
    |||||||||||||||||||||||||||||||||||||||            |||||||||||||||||||||||||||||||||||||||||||||||||    
T  12425873 cataatatatgcaaggattgaggtttgaactctggacaccaaaaaaaaacagtcttttggtttcaggttccaatttccactttgcaatactcaactcgac 12425774  T
Q  211 tctgataccatgttaaatgagattgaatctcatcacaaaaa 251  Q
    ||||||||||||||||||| |||||||||||||||||||||    
T  12425773 tctgataccatgttaaatgggattgaatctcatcacaaaaa 12425733  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 208 - 250
Target Start/End: Original strand, 32406993 - 32407035
Alignment:
Q  208 gactctgataccatgttaaatgagattgaatctcatcacaaaa 250  Q
    |||||||||||||||||||||||| ||| |||||||| |||||    
T  32406993 gactctgataccatgttaaatgagtttggatctcatcccaaaa 32407035  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 72 - 109
Target Start/End: Complemental strand, 12425960 - 12425923
Alignment:
Q  72 aaaagcctttgttaaaaacatttatacctccgacaaac 109  Q
    |||||||||||||||||||||||||| |||| ||||||    
T  12425960 aaaagcctttgttaaaaacatttatagctcctacaaac 12425923  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 207 - 250
Target Start/End: Original strand, 33408169 - 33408212
Alignment:
Q  207 cgactctgataccatgttaaatgagattgaatctcatcacaaaa 250  Q
    ||||||||||||||||||||||||| |||||||||||| |||||    
T  33408169 cgactctgataccatgttaaatgagtttgaatctcatcccaaaa 33408212  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 180 - 252
Target Start/End: Complemental strand, 42042220 - 42042148
Alignment:
Q  180 ccaatttccactttgcaatactcaactcgactctgataccatgttaaatgagattgaatctcatcacaaaaac 252  Q
    |||||| |||| | ||||| || ||| |||||||||||||||||||||| || ||| |||||||| |||||||    
T  42042220 ccaattcccacatcgcaatccttaacccgactctgataccatgttaaataagtttggatctcatcccaaaaac 42042148  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 211 - 244
Target Start/End: Complemental strand, 6424070 - 6424037
Alignment:
Q  211 tctgataccatgttaaatgagattgaatctcatc 244  Q
    |||||||||||||||||| |||||||||||||||    
T  6424070 tctgataccatgttaaataagattgaatctcatc 6424037  T

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Target: chr8 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 192 - 250
Target Start/End: Complemental strand, 30525326 - 30525268
Alignment:
Q  192 ttgcaatactcaactcgactctgataccatgttaaatgagattgaatctcatcacaaaa 250  Q
    ||||||| || ||||||||||||||||||||||||||| | ||| |||||||| |||||    
T  30525326 ttgcaatccttaactcgactctgataccatgttaaatgtgcttgtatctcatcccaaaa 30525268  T

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Target: chr4 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 192 - 250
Target Start/End: Original strand, 54137261 - 54137319
Alignment:
Q  192 ttgcaatactcaactcgactctgataccatgttaaatgagattgaatctcatcacaaaa 250  Q
    ||||||| || ||| |||||||||||||||||||| |||| |||||||||||| |||||    
T  54137261 ttgcaatccttaacccgactctgataccatgttaattgagcttgaatctcatcccaaaa 54137319  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 182 - 244
Target Start/End: Complemental strand, 582352 - 582290
Alignment:
Q  182 aatttccactttgcaatactcaactcgactctgataccatgttaaatgagattgaatctcatc 244  Q
    |||| |||| |||||||  | ||| ||||||||||||||||||||||||  ||||||||||||    
T  582352 aattcccacattgcaatcttaaacccgactctgataccatgttaaatgaacttgaatctcatc 582290  T

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Target: chr3 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 210 - 251
Target Start/End: Complemental strand, 20491005 - 20490964
Alignment:
Q  210 ctctgataccatgttaaatgagattgaatctcatcacaaaaa 251  Q
    |||||||||||||||||||||| ||| |||||||| ||||||    
T  20491005 ctctgataccatgttaaatgagcttggatctcatcccaaaaa 20490964  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 243
Target Start/End: Complemental strand, 22312387 - 22312323
Alignment:
Q  179 tccaatttccactttgcaatactcaactcgactctgataccatgttaaatgagattgaatctcat 243  Q
    |||||||| ||| |||||||  | ||| ||||||||||||||||||||||  | |||||||||||    
T  22312387 tccaatttgcacattgcaatctttaacccgactctgataccatgttaaataggtttgaatctcat 22312323  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 227
Target Start/End: Complemental strand, 36202028 - 36201980
Alignment:
Q  179 tccaatttccactttgcaatactcaactcgactctgataccatgttaaa 227  Q
    |||||||||||| ||| ||| || ||| |||||||||||||||||||||    
T  36202028 tccaatttccacattgtaattcttaacccgactctgataccatgttaaa 36201980  T

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