View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7117_low_38 (Length: 244)

Name: NF7117_low_38
Description: NF7117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7117_low_38
NF7117_low_38
[»] chr8 (4 HSPs)
chr8 (1-227)||(29115428-29115655)
chr8 (5-227)||(24423269-24423482)
chr8 (5-51)||(9818241-9818287)
chr8 (5-51)||(21231912-21231958)
[»] chr7 (7 HSPs)
chr7 (1-226)||(31211132-31211350)
chr7 (22-227)||(46002565-46002764)
chr7 (1-94)||(46002764-46002857)
chr7 (5-56)||(9745169-9745220)
chr7 (5-51)||(8311776-8311822)
chr7 (5-51)||(10530204-10530250)
chr7 (5-51)||(29587620-29587666)
[»] chr3 (4 HSPs)
chr3 (3-99)||(11650541-11650637)
chr3 (1-68)||(19544707-19544773)
chr3 (5-51)||(29453693-29453738)
chr3 (5-51)||(52641395-52641441)
[»] chr1 (2 HSPs)
chr1 (1-49)||(24304411-24304459)
chr1 (5-51)||(51443589-51443635)
[»] chr2 (3 HSPs)
chr2 (5-46)||(22403793-22403834)
chr2 (5-51)||(27977214-27977260)
chr2 (5-51)||(28063742-28063788)
[»] scaffold0259 (1 HSPs)
scaffold0259 (1-51)||(2566-2616)
[»] scaffold0022 (1 HSPs)
scaffold0022 (5-51)||(2068-2114)


Alignment Details
Target: chr8 (Bit Score: 179; Significance: 1e-96; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 29115655 - 29115428
Alignment:
Q  1 taggttatgatattgaatttgatatgcttcatgattcgatggatgagtgaa-gatatgaattattattaatagatataacaatttttgtttagtaatttt 99  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| ||||||||||| |||||||||||||||    
T  29115655 taggttatgatattgaatttgatatgcttcatgattcgatggatgagtgaaagatattaattattattaataaatataacaattgttgtttagtaatttt 29115556  T
Q  100 gttnnnnnnnttgattttgtagaataggtgaattttgataacattatacgtatgattgttgatttgtggaattggtaatttgttgatttatatatatgat 199  Q
    |||       |||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  29115555 gttaaaaaaattgattttgttgaataggtgaattttgataacattatacgtatgattgttgatttgcggaattggtaatttgttgatttatatatatgat 29115456  T
Q  200 tgttgatatgtgaaattgagaattttat 227  Q
    ||||||||||||||||||||||||||||    
T  29115455 tgttgatatgtgaaattgagaattttat 29115428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 5 - 227
Target Start/End: Original strand, 24423269 - 24423482
Alignment:
Q  5 ttatgatattgaatttgatatgcttcatgattcgatggatgagtgaagatatgaattattattaatagatataacaatttttgtttagtaa-ttttgttn 103  Q
    ||||||||||||||||  |||||||| | ||||  |||||||||||||| || |||  ||||||||| |||||| |||| ||||||||||| |||||||     
T  24423269 ttatgatattgaattttgtatgcttctt-attcattggatgagtgaagagattaatggttattaataaatataataattgttgtttagtaaattttgtta 24423367  T
Q  104 nnnnnnttgattttgtagaataggtgaattttgataacattatacgtatgattgttgatttgtggaattggtaatttgttgatttatatatatgattgtt 203  Q
          |||| || | |||||| ||||||||||||||  ||||| ||||||||| | | ||| | ||||||||||||||||||  || ||||||||||||    
T  24423368 ------ttgaatt-gaagaatatgtgaattttgataa--ttataagtatgattgattagttgcgaaattggtaatttgttgatcgatgtatatgattgtt 24423458  T
Q  204 gatatgtgaaattgagaattttat 227  Q
     ||||| | ||||| || ||||||    
T  24423459 aatatgcggaattgtgatttttat 24423482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 51
Target Start/End: Complemental strand, 9818287 - 9818241
Alignment:
Q  5 ttatgatattgaatttgatatgcttcatgattcgatggatgagtgaa 51  Q
    ||||||| |||||||||||||||||| |||||  |||||||||||||    
T  9818287 ttatgatgttgaatttgatatgcttcttgatttaatggatgagtgaa 9818241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 51
Target Start/End: Complemental strand, 21231958 - 21231912
Alignment:
Q  5 ttatgatattgaatttgatatgcttcatgattcgatggatgagtgaa 51  Q
    ||||||| |||||||||||||||||| |||||  |||||||||||||    
T  21231958 ttatgatgttgaatttgatatgcttcttgatttaatggatgagtgaa 21231912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 82; Significance: 8e-39; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 31211132 - 31211350
Alignment:
Q  1 taggttatgatattgaatttgatatgcttcatgattcgatggatgagtgaagatatgaattattattaatagatataacaatttttgtttagtaa-tttt 99  Q
    |||||||||||||| ||||||||||||||| |||||  || |||| ||||||| || |||| ||||||||| |||||| |||| ||||||||||| ||||    
T  31211132 taggttatgatattaaatttgatatgcttcttgatttaatagatgcgtgaagagattaattcttattaataaatataagaattgttgtttagtaaatttt 31211231  T
Q  100 gttnnnnnnnttgattttgtagaataggtgaattttgataacattatacgtatgattgttgatttgtggaattggtaatttgttgatttatatatatgat 199  Q
    |||       ||||||||  |||||| ||||||||||||||  |||||| |||||||| |   ||||| ||||||||||||||||||| || ||||||||    
T  31211232 gtta------ttgattttaaagaatatgtgaattttgataa--ttatacttatgattgatttgttgtgaaattggtaatttgttgattgatgtatatgat 31211323  T
Q  200 tgttgatatgtgaaattgagaatttta 226  Q
    |||||||||||||||||| | ||||||    
T  31211324 tgttgatatgtgaaattgtggatttta 31211350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 22 - 227
Target Start/End: Complemental strand, 46002764 - 46002565
Alignment:
Q  22 atatgcttcatgattcgatggatgagtgaagatatgaattattattaatagatataacaatttttgtttagtaatttt-gttnnnnnnnttgattttgta 120  Q
    ||||||||| |||||| || |||||||||| | || |||| ||||||||| |||||| |||| ||| ||||||||||| |||       ||||||||| |    
T  46002764 atatgcttcttgattctattgatgagtgaaaagattaattgttattaataaatataagaattgttggttagtaatttttgtta------ttgattttgaa 46002671  T
Q  121 gaataggtgaattttgataacattatacgtatgattgttgatttgtggaattggtaatttgtt-gatttatatatatgattgttgatatgtgaaattgag 219  Q
    ||||| ||||||||||||||  ||||| ||||||||| | | ||||| ||||||||||||||| ||||||| |||||||||||||||| |||||||||      
T  46002670 gaatatgtgaattttgataa--ttatatgtatgattgattagttgtgaaattggtaatttgtttgatttatgtatatgattgttgatacgtgaaattgta 46002573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 46002857 - 46002764
Alignment:
Q  1 taggttatgatattgaatttgatatgcttcatgattcgatggatgagtgaagatatgaattattattaatagatataacaatttttgtttagta 94  Q
    |||||| ||||||||||||||||||||||| |||||| ||||||||||||| | || |||| ||||||||| |||||| |||| ||| ||||||    
T  46002857 taggttgtgatattgaatttgatatgcttcttgattcaatggatgagtgaaaagattaattgttattaataaatataagaattgttggttagta 46002764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 5 - 56
Target Start/End: Original strand, 9745169 - 9745220
Alignment:
Q  5 ttatgatattgaatttgatatgcttcatgattcgatggatgagtgaagatat 56  Q
    ||||||| |||||||||||||||||| |||||| ||||||||||||| ||||    
T  9745169 ttatgatgttgaatttgatatgcttcttgattcaatggatgagtgaaaatat 9745220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 51
Target Start/End: Original strand, 8311776 - 8311822
Alignment:
Q  5 ttatgatattgaatttgatatgcttcatgattcgatggatgagtgaa 51  Q
    ||||||| |||||||||| ||||||| |||||||||||||| |||||    
T  8311776 ttatgatgttgaatttgacatgcttcttgattcgatggatgggtgaa 8311822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 51
Target Start/End: Complemental strand, 10530250 - 10530204
Alignment:
Q  5 ttatgatattgaatttgatatgcttcatgattcgatggatgagtgaa 51  Q
    ||||||| |||||||||||||||||| |||||  |||||||||||||    
T  10530250 ttatgatgttgaatttgatatgcttcttgatttaatggatgagtgaa 10530204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 51
Target Start/End: Original strand, 29587620 - 29587666
Alignment:
Q  5 ttatgatattgaatttgatatgcttcatgattcgatggatgagtgaa 51  Q
    ||||||| |||||||||||||||||| |||||  |||||||||||||    
T  29587620 ttatgatgttgaatttgatatgcttcttgatttaatggatgagtgaa 29587666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 53; Significance: 2e-21; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 3 - 99
Target Start/End: Complemental strand, 11650637 - 11650541
Alignment:
Q  3 ggttatgatattgaatttgatatgcttcatgattcgatggatgagtgaagatatgaattattattaatagatataacaatttttgtttagtaatttt 99  Q
    |||| ||||||||||||||||||||||| |||||| || ||||||| |||| || |||| ||||||||| |||||| |||| |||||||||||||||    
T  11650637 ggttgtgatattgaatttgatatgcttcttgattcaattgatgagttaagacattaattgttattaataaatataagaattgttgtttagtaatttt 11650541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 19544773 - 19544707
Alignment:
Q  1 taggttatgatattgaatttgatatgcttcatgattcgatggatgagtgaagatatgaattattatta 68  Q
    ||||||||||| ||||||| |||||||||  |||||||||||||||||||| | ||  ||||||||||    
T  19544773 taggttatgatgttgaatt-gatatgcttattgattcgatggatgagtgaaaagatttattattatta 19544707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 51
Target Start/End: Original strand, 29453693 - 29453738
Alignment:
Q  5 ttatgatattgaatttgatatgcttcatgattcgatggatgagtgaa 51  Q
    |||||| ||||||||||||||||||| |||||| |||||||||||||    
T  29453693 ttatgacattgaatttgatatgcttcttgattc-atggatgagtgaa 29453738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 51
Target Start/End: Complemental strand, 52641441 - 52641395
Alignment:
Q  5 ttatgatattgaatttgatatgcttcatgattcgatggatgagtgaa 51  Q
    ||||||| |||||||||||||||||| ||| || |||||||||||||    
T  52641441 ttatgatgttgaatttgatatgcttcttgactcaatggatgagtgaa 52641395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 24304459 - 24304411
Alignment:
Q  1 taggttatgatattgaatttgatatgcttcatgattcgatggatgagtg 49  Q
    ||||||||||||||| ||||||||||||||||||||| || ||||||||    
T  24304459 taggttatgatattggatttgatatgcttcatgattctatcgatgagtg 24304411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 51
Target Start/End: Complemental strand, 51443635 - 51443589
Alignment:
Q  5 ttatgatattgaatttgatatgcttcatgattcgatggatgagtgaa 51  Q
    ||||||| |||||||||||||||||| |||||  |||||||||||||    
T  51443635 ttatgatgttgaatttgatatgcttcttgatttaatggatgagtgaa 51443589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 5 - 46
Target Start/End: Original strand, 22403793 - 22403834
Alignment:
Q  5 ttatgatattgaatttgatatgcttcatgattcgatggatga 46  Q
    ||||||| |||||||||||||||||| |||||||||||||||    
T  22403793 ttatgatgttgaatttgatatgcttcttgattcgatggatga 22403834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 51
Target Start/End: Complemental strand, 27977260 - 27977214
Alignment:
Q  5 ttatgatattgaatttgatatgcttcatgattcgatggatgagtgaa 51  Q
    ||||||| |||||||||||||||||| |||||  |||||||||||||    
T  27977260 ttatgatgttgaatttgatatgcttcttgatttaatggatgagtgaa 27977214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 51
Target Start/End: Complemental strand, 28063788 - 28063742
Alignment:
Q  5 ttatgatattgaatttgatatgcttcatgattcgatggatgagtgaa 51  Q
    ||||||| |||||||||||||||||| |||||  |||||||||||||    
T  28063788 ttatgatgttgaatttgatatgcttcttgatttaatggatgagtgaa 28063742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0259 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0259
Description:

Target: scaffold0259; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 2616 - 2566
Alignment:
Q  1 taggttatgatattgaatttgatatgcttcatgattcgatggatgagtgaa 51  Q
    ||||||||||| |||||||||| ||||||| |||||  |||||||||||||    
T  2616 taggttatgatgttgaatttgacatgcttcttgatttaatggatgagtgaa 2566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 51
Target Start/End: Original strand, 2068 - 2114
Alignment:
Q  5 ttatgatattgaatttgatatgcttcatgattcgatggatgagtgaa 51  Q
    ||||||| |||||||||||||||||| |||||  |||||||||||||    
T  2068 ttatgatgttgaatttgatatgcttcttgatttaatggatgagtgaa 2114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University