View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7117_low_42 (Length: 239)
Name: NF7117_low_42
Description: NF7117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7117_low_42 |
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Alignment Details
Target: chr5 (Bit Score: 169; Significance: 9e-91; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 31784630 - 31784408
Alignment:
| Q |
1 |
cggtaggttcttcaaacttattgttcaaaataatattctataaatgcttttttcgaccttaaatcttttaaggatttgagtgtaaacaattttctgactg |
100 |
Q |
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| T |
31784630 |
cggtaggttcttcaaagttattgttcaaaataatattctataaatgcctttt-cgacgttaaatctttaaag-atttgagtgtaaacaattttctgacta |
31784533 |
T |
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| Q |
101 |
tgtatgagacttcatcaatctctcaacgtctatggcagaaattgacatgtccatggaaaactcccctactttagagaagcagaataaattattggaagag |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||| |||||||||||||||| |
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| T |
31784532 |
tgtatgagacttcatcaatctctcaacgtctatggcagaaattgacaagtccatggaaaactcccctactttggagaagcagagtaaattattggaagag |
31784433 |
T |
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| Q |
201 |
gagaaagcaagaa-tgactaacatc |
224 |
Q |
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||||||||||||| ||||||||||| |
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| T |
31784432 |
gagaaagcaagaattgactaacatc |
31784408 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 50; Significance: 9e-20; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 83 - 224
Target Start/End: Complemental strand, 32600933 - 32600792
Alignment:
| Q |
83 |
taaacaattttctgactgtgtatgagacttcatcaatctctcaacgtctatggcagaaattgacatgtccatggaaaactcccctactttagagaagcag |
182 |
Q |
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||||||||||||||||| |||||| || ||||||||||| ||| ||||| ||||||||| |||| |||||||||||| || |||||| | ||| |||| |
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| T |
32600933 |
taaacaattttctgactatgtatgggagttcatcaatcttgcaaagtctacggcagaaatcgacaagtccatggaaaattcgcctactctggaggagcac |
32600834 |
T |
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| Q |
183 |
aataaattattggaagaggagaaagcaagaatgactaacatc |
224 |
Q |
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| T |
32600833 |
attaaattcttagaggaggagaaagtgagattggctaacatc |
32600792 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 84 - 207
Target Start/End: Complemental strand, 32596346 - 32596223
Alignment:
| Q |
84 |
aaacaattttctgactgtgtatgagacttcatcaatctctcaacgtctatggcagaaattgacatgtccatggaaaactcccctactttagagaagcaga |
183 |
Q |
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|||||||||||||||| |||||| || |||||||||| | | ||||||| |||||||||||| |||||||||||| || |||||||| ||| |||| | |
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| T |
32596346 |
aaacaattttctgactatgtatgggagttcatcaatcatgcgaagtctatgacagaaattgacaagtccatggaaaattcgcctactttggaggagcaca |
32596247 |
T |
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| Q |
184 |
ataaattattggaagaggagaaag |
207 |
Q |
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|||||| || || |||||||||| |
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| T |
32596246 |
gtaaattcttagaggaggagaaag |
32596223 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 5909172 - 5909123
Alignment:
| Q |
1 |
cggtaggttcttcaaacttattgttcaaaataatattctataaatgcttt |
50 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
5909172 |
cggtaggtctttcaaacttattgttcaaaataatattctataaatgcttt |
5909123 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 185 - 224
Target Start/End: Original strand, 32801984 - 32802023
Alignment:
| Q |
185 |
taaattattggaagaggagaaagcaagaatgactaacatc |
224 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
32801984 |
taaattattggaagaggagaaagcaagaatgactaacatc |
32802023 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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