View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7117_low_49 (Length: 223)
Name: NF7117_low_49
Description: NF7117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7117_low_49 |
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Alignment Details
Target: chr5 (Bit Score: 124; Significance: 6e-64; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 19 - 217
Target Start/End: Original strand, 12350406 - 12350588
Alignment:
| Q |
19 |
taagcgtctgagcagtttgatgcatgagacaggcgcactagctaggtatatttcaagggattgacttggattgggtaatggaggattaatgatttctcgt |
118 |
Q |
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| T |
12350406 |
taagcgtctgagcagtttgatgcatgagacaggcgcactagctaggtatatttcaagggattgacttggattgggtaatggaggattaatgatttctcgt |
12350505 |
T |
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| Q |
119 |
ctctaatatgcacatagtacactaatacttgggaaggcatgcaatcatgatccaaaaaatctctctaaatccatatcctctgacctctctgctcctcct |
217 |
Q |
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| T |
12350506 |
ctctaatatgcacatagta-ac---------gga------ggaatcatgatccaaaaaatctctctaaatccatatcctctgacctctctcttcctcct |
12350588 |
T |
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