View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7117_low_5 (Length: 451)
Name: NF7117_low_5
Description: NF7117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7117_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 275; Significance: 1e-153; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 275; E-Value: 1e-153
Query Start/End: Original strand, 58 - 365
Target Start/End: Original strand, 1116320 - 1116631
Alignment:
| Q |
58 |
attcaagcacgtgcaatctcaattcagtaagtttggggaagttaaataagttgctaagggtattttgggaaatatatttaaagattttgagtttgaggtt |
157 |
Q |
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| T |
1116320 |
attcaagcagctgcaatctcaattcagtaagtttggggaagttaaataagttgctaagggtattttgggaaatatatttaaagattttgagtttgaggtt |
1116419 |
T |
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| Q |
158 |
gtacctaggaaacacaaacatg----agtgtgtgttttttgacgtgcaaaaaggttaaaaaagcattacaaaatcctgttcctatctctgttgtggattg |
253 |
Q |
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| T |
1116420 |
gtacctaggaaacacaaacatacataagtgtttgttttttgacgtggaaaaaggttaaaaaagcattacaaaatcctgttcctatctctgttgtggattg |
1116519 |
T |
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| Q |
254 |
aggaaggatgatgggtgctatcagtatcatggctttaccactcgtcatctccgttttcaaacctctctcaaccaccacccccctccactctacacttcta |
353 |
Q |
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| T |
1116520 |
aggaaggatgatgggtgctatcagtatcatggctttaccactcgtcatctccgttttcaaacctctctcaaccaccacccccctccactctacacttcta |
1116619 |
T |
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| Q |
354 |
cgccgccgctgt |
365 |
Q |
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| T |
1116620 |
cgccgccgctgt |
1116631 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 1114605 - 1114676
Alignment:
| Q |
1 |
aattcaagtacatttacctcatttgt------aaaaaagaaaatgtatatttacttaaatccaattcaagca |
66 |
Q |
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| T |
1114605 |
aattcaagtacatttacctcatttgtaaaaaaaaaaaaaaaaaagtatatttacctaaatccaattcaagca |
1114676 |
T |
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