View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7117_low_50 (Length: 215)
Name: NF7117_low_50
Description: NF7117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7117_low_50 |
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Alignment Details
Target: chr1 (Bit Score: 169; Significance: 8e-91; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 169; E-Value: 8e-91
Query Start/End: Original strand, 17 - 214
Target Start/End: Original strand, 33861994 - 33862193
Alignment:
| Q |
17 |
caaagatcatcaacaagatttgaaa--gtttctcagatatcttagtggggtgggggatctgtattaattagctacaaagatgcagatacagcgggtgatt |
114 |
Q |
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| T |
33861994 |
caaagatcatcgacaagatttgaaatagtttctcagatatcttagtggggtggtggatctgtattaattagctacaaagatgcagatacagcgggtgatt |
33862093 |
T |
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| Q |
115 |
ttgattctagaaaatctaattatggttacataatgacttttgcatgataacccatttgggttggcctagcggtttggagttttggcctttgcttctcctc |
214 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| |||||| |
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| T |
33862094 |
ttgattctagaaaatctaattatggttacataatgacttttgcatgataacccatttgggttggcctagtggtttggagttttggactttgctcctcctc |
33862193 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 169; E-Value: 8e-91
Query Start/End: Original strand, 17 - 214
Target Start/End: Complemental strand, 33918928 - 33918729
Alignment:
| Q |
17 |
caaagatcatcaacaagatttgaaa--gtttctcagatatcttagtggggtgggggatctgtattaattagctacaaagatgcagatacagcgggtgatt |
114 |
Q |
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||||||||||| ||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33918928 |
caaagatcatcgacaagatttgaaatagtttctcagatatcttagtggggtggtggatctgtattaattagctacaaagatgcagatacagcgggtgatt |
33918829 |
T |
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| Q |
115 |
ttgattctagaaaatctaattatggttacataatgacttttgcatgataacccatttgggttggcctagcggtttggagttttggcctttgcttctcctc |
214 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| |||||| |
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| T |
33918828 |
ttgattctagaaaatctaattatggttacataatgacttttgcatgataacccatttgggttggcctagtggtttggagttttggactttgctcctcctc |
33918729 |
T |
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