View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7117_low_7 (Length: 421)
Name: NF7117_low_7
Description: NF7117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7117_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 172; Significance: 3e-92; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 175 - 404
Target Start/End: Original strand, 29392969 - 29393197
Alignment:
| Q |
175 |
cttcgactctcttcaaatttccacctcctgtatcaaattatatttatttatttaagaaatttgtgattttcgtaaaagcaataatagggtatcagggtct |
274 |
Q |
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| T |
29392969 |
cttcgactctcttcaaattttcacctcctgtatcaaattatatttatttatttaagaaatttgtgattttcgtaaaagcaataatagggtatcagggtct |
29393068 |
T |
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| Q |
275 |
acaannnnnnnactatataaccnnnnnnntatgtcttttagtgataggaaaaatccatcagcagaatatattaatctttacaaaatagacaacataacca |
374 |
Q |
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|||| ||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
29393069 |
acaatttttttactatataaccaaaaaaatatgtcttttagtgatagg-aaaatccatcagcagaatatattaatctgtacaaaatagacaacataacca |
29393167 |
T |
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| Q |
375 |
catcaaattttatacattacacttacatgt |
404 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
29393168 |
catcaaattttatacattacacttacatgt |
29393197 |
T |
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