View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7118_high_13 (Length: 346)

Name: NF7118_high_13
Description: NF7118
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7118_high_13
NF7118_high_13
[»] chr4 (2 HSPs)
chr4 (13-255)||(6662048-6662300)
chr4 (240-340)||(6662490-6662590)
[»] chr5 (2 HSPs)
chr5 (13-82)||(26708201-26708270)
chr5 (13-82)||(26977935-26978004)
[»] chr2 (2 HSPs)
chr2 (15-51)||(10945639-10945675)
chr2 (15-51)||(10939770-10939806)
[»] chr6 (1 HSPs)
chr6 (15-51)||(24043299-24043335)
[»] chr1 (1 HSPs)
chr1 (15-51)||(49389252-49389288)
[»] chr7 (2 HSPs)
chr7 (113-160)||(31208365-31208412)
chr7 (15-47)||(13817476-13817508)
[»] chr3 (1 HSPs)
chr3 (24-52)||(14656377-14656405)


Alignment Details
Target: chr4 (Bit Score: 142; Significance: 2e-74; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 13 - 255
Target Start/End: Original strand, 6662048 - 6662300
Alignment:
Q  13 aatatattcaggtctacttagattatttctaagcgacaacgttttaattacacttgtttcactaacgcatgtaactctatgagtttctcagttttgttgt 112  Q
    |||||||||||||||||||| ||||||||||| ||||||| | |||||||||||||||||||||| || |||||||  |||||||||||| ||||||| |    
T  6662048 aatatattcaggtctacttatattatttctaaacgacaacatcttaattacacttgtttcactaatgcttgtaacttcatgagtttctcaattttgttat 6662147  T
Q  113 caatgatataattaaataatattttacaataaaataaacatgctcaaactatgtattaatataca----------tcacaaagtgcgtattatatacccc 202  Q
    |||| ||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||          || ||||||||||||||||| ||||    
T  6662148 caataatataattaaataatatttcacaataaaataaacatactcaaactatgtattaatatacaaacacaagattctcaaagtgcgtattatattcccc 6662247  T
Q  203 acaacaaaatatattcaaacagaattaaagtgaacatatcaatttaatatata 255  Q
    ||||||||| ||||||||||| ||||||||||| |||||||||||||| ||||    
T  6662248 acaacaaaagatattcaaacaaaattaaagtgagcatatcaatttaatttata 6662300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 240 - 340
Target Start/End: Original strand, 6662490 - 6662590
Alignment:
Q  240 atcaatttaatatatacccacagaattcaagttttatattttaaatatagggtcacnnnnnnnnttagttaacaagcatatcaaacctgtacacattctg 339  Q
    ||||||||||| |||||||||| |||||||||||||||||||| |||||||||||         | ||||||||||||||||||||||||||||||||||    
T  6662490 atcaatttaatttatacccacaaaattcaagttttatattttatatatagggtcataaaaatattcagttaacaagcatatcaaacctgtacacattctg 6662589  T
Q  340 a 340  Q
    |    
T  6662590 a 6662590  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 13 - 82
Target Start/End: Original strand, 26708201 - 26708270
Alignment:
Q  13 aatatattcaggtctacttagattatttctaagcgacaacgttttaattacacttgtttcactaacgcat 82  Q
    ||||||||||| |||||||||||||||||||||||||||| | |   |||||||||||| ||||| ||||    
T  26708201 aatatattcagatctacttagattatttctaagcgacaacatctctcttacacttgttttactaatgcat 26708270  T

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Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 13 - 82
Target Start/End: Original strand, 26977935 - 26978004
Alignment:
Q  13 aatatattcaggtctacttagattatttctaagcgacaacgttttaattacacttgtttcactaacgcat 82  Q
    ||||||||||| |||||||||||||||||||||||||||| | |   |||||||||||| ||||| ||||    
T  26977935 aatatattcagatctacttagattatttctaagcgacaacatctctcttacacttgttttactaatgcat 26978004  T

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Target: chr2 (Bit Score: 37; Significance: 0.000000000008; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 15 - 51
Target Start/End: Original strand, 10945639 - 10945675
Alignment:
Q  15 tatattcaggtctacttagattatttctaagcgacaa 51  Q
    |||||||||||||||||||||||||||||||||||||    
T  10945639 tatattcaggtctacttagattatttctaagcgacaa 10945675  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 15 - 51
Target Start/End: Original strand, 10939770 - 10939806
Alignment:
Q  15 tatattcaggtctacttagattatttctaagcgacaa 51  Q
    ||||||||| |||||||||||||||||||||||||||    
T  10939770 tatattcagatctacttagattatttctaagcgacaa 10939806  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 15 - 51
Target Start/End: Original strand, 24043299 - 24043335
Alignment:
Q  15 tatattcaggtctacttagattatttctaagcgacaa 51  Q
    ||||||||| |||||||||||||||||||||||||||    
T  24043299 tatattcagatctacttagattatttctaagcgacaa 24043335  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 15 - 51
Target Start/End: Original strand, 49389252 - 49389288
Alignment:
Q  15 tatattcaggtctacttagattatttctaagcgacaa 51  Q
    |||||||| ||||||||||||||||||||||||||||    
T  49389252 tatattcaagtctacttagattatttctaagcgacaa 49389288  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 113 - 160
Target Start/End: Original strand, 31208365 - 31208412
Alignment:
Q  113 caatgatataattaaataatattttacaataaaataaacatgctcaaa 160  Q
    |||| ||||||||||||||||||| ||||||||||||| || ||||||    
T  31208365 caataatataattaaataatatttcacaataaaataaaaattctcaaa 31208412  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 15 - 47
Target Start/End: Complemental strand, 13817508 - 13817476
Alignment:
Q  15 tatattcaggtctacttagattatttctaagcg 47  Q
    ||||||||| |||||||||||||||||||||||    
T  13817508 tatattcagatctacttagattatttctaagcg 13817476  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 24 - 52
Target Start/End: Complemental strand, 14656405 - 14656377
Alignment:
Q  24 gtctacttagattatttctaagcgacaac 52  Q
    |||||||||||||||||||||||||||||    
T  14656405 gtctacttagattatttctaagcgacaac 14656377  T

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