View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7118_high_2 (Length: 532)
Name: NF7118_high_2
Description: NF7118
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7118_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 408; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 10 - 436
Target Start/End: Original strand, 47453717 - 47454146
Alignment:
| Q |
10 |
aagaatattctaacaaatccttaaattgcaagataactttttcaattttgtaagatagggaataaaaagacaactagctaatcattataaaaaagacaag |
109 |
Q |
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| T |
47453717 |
aagaatattctaacaaatccttaaattgcaagataactttttcaattttgtaagatagggaataaaaagacaactagctaatcatcataaaaaagacaag |
47453816 |
T |
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| Q |
110 |
aatcttgagtcttgacatagaaggtggaccaaacttgaagggggcaattaagcataatccaaaacttttcaagatttggaaagagttatatatgcacatc |
209 |
Q |
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| T |
47453817 |
aatcttgagtcttgacatagaaggtggaccaaacttgaagggggcaattaagcataatccaaaacttttcaagatttggtaagagttatatatgcacatc |
47453916 |
T |
|
| Q |
210 |
acaatatgcatgctaaaagcaattaaatgcctcttgttggattctgaaaattgacttgtaaatactataaatcataaagaaacaaaaattaaacacacag |
309 |
Q |
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| T |
47453917 |
acaatatgcatgctaaaagcaattaaatgcctcttgttggattctgaaaattgacttgtaaatactataaatcataaagaaacaaaaattaaacacacag |
47454016 |
T |
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| Q |
310 |
aatcttgaatagcaatcattattagattataaaggaacagattcaaacctcataaagcttc---ataataattaatgaaacaagagaaacaatataaata |
406 |
Q |
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| T |
47454017 |
aatcttgaatagcaatcattattagattataaaggaacagattcaaacctcataaagcttcataataataattaatgaaacaagagaaacaatataaata |
47454116 |
T |
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| Q |
407 |
agtaataaattcaagtctttttaattatgt |
436 |
Q |
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| T |
47454117 |
agtaataaattcaagtctttttaattatgt |
47454146 |
T |
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