View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7118_high_30 (Length: 236)
Name: NF7118_high_30
Description: NF7118
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7118_high_30 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 1114606 - 1114384
Alignment:
| Q |
1 |
ttgagtttgagtaccatctagaaatctagaatgtataagtggtacatgaagtaagtttatgtaaatgtgcttaaatttagtttacattaacatgtttaaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |||| |||||||||||| |
|
|
| T |
1114606 |
ttgagtttgagtaccatctagaaatctagaatgtataagtggtacatgaagtaagtttatgtaaatgtgtttaaacttagtctacaggaacatgtttaaa |
1114507 |
T |
|
| Q |
101 |
tgtagttgtatttgagtttattaggttatatgttgattatgtcatgcttggttgaaacgataaagtgtttaaatgatttcatttctagattgtcagttca |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||| | |
|
|
| T |
1114506 |
tgtagttgtatttgagtttattaggttatatgttgattaggtcatgtttggttgaaacgataaagtgtttaaatgattacatttctagattgtcagttta |
1114407 |
T |
|
| Q |
201 |
tccaaattattgcatgtcaaatt |
223 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
1114406 |
tccaaattattgcatgtcaaatt |
1114384 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University