View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7118_high_7 (Length: 417)
Name: NF7118_high_7
Description: NF7118
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7118_high_7 |
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Alignment Details
Target: chr7 (Bit Score: 193; Significance: 1e-105; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 18 - 221
Target Start/End: Original strand, 44150126 - 44150330
Alignment:
| Q |
18 |
aatccttggtttactctgttgttttcttcagttaatgcatcacagaatgctctgtgggttataaaactgtctctcctgcgttatacagaaaaataggttt |
117 |
Q |
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| T |
44150126 |
aatccttggtttactctgttgttttcttcagttaatgcatcacagaatgctctgtgggttataaaactgtctctcctgcgttatacagaaaaataggttt |
44150225 |
T |
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| Q |
118 |
-atatcatttgcaacaagataattttatagttgaagcacttcgtactagtagtacttttgtatgagacattaaaatttgatgaagaacaagtggctaaac |
216 |
Q |
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| T |
44150226 |
tatatcatatgcaacaagataattttatagttgaagcacttcgtactagtagtacttttgtatgagacattaaaatttgatgaagaacaagtggctaaac |
44150325 |
T |
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| Q |
217 |
tacac |
221 |
Q |
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||||| |
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| T |
44150326 |
tacac |
44150330 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 286 - 417
Target Start/End: Original strand, 44150395 - 44150526
Alignment:
| Q |
286 |
ggtccaattaactacaaaagttagacaccttggaccctaatttttccctgttacaattttggcccgttaaatcacaaatgttaaacactttagttttttc |
385 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44150395 |
ggtccaattaactacaaaagttagacaccttggaccctaatttttcactgttacaattttggcccgttaaatcacaaatgttaaacactttagttttttc |
44150494 |
T |
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| Q |
386 |
tctctgttttgtgtttaaatccatcaaatgtt |
417 |
Q |
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| T |
44150495 |
tgtctgttttgtgtttaaatccatcaaatgtt |
44150526 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 51 - 96
Target Start/End: Original strand, 50786101 - 50786146
Alignment:
| Q |
51 |
aatgcatcacagaatgctctgtgggttataaaactgtctctcctgc |
96 |
Q |
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| T |
50786101 |
aatgcatcacagaaggctctgtgagttatgaaactgtctctcctgc |
50786146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 34 - 96
Target Start/End: Complemental strand, 36990524 - 36990462
Alignment:
| Q |
34 |
tgttgttttcttcagttaatgcatcacagaatgctctgtgggttataaaactgtctctcctgc |
96 |
Q |
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||||||| ||||||| ||||| |||||||||||||||||||| || || |||||||| |||| |
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| T |
36990524 |
tgttgttctcttcagccaatgcgtcacagaatgctctgtgggtaatgaagctgtctcttctgc |
36990462 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 45 - 95
Target Start/End: Complemental strand, 42898964 - 42898914
Alignment:
| Q |
45 |
tcagttaatgcatcacagaatgctctgtgggttataaaactgtctctcctg |
95 |
Q |
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|||| ||||||||||||||| |||||||| ||||| |||||||| |||||| |
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| T |
42898964 |
tcagctaatgcatcacagaaggctctgtgagttatgaaactgtccctcctg |
42898914 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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