View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7118_low_1 (Length: 585)
Name: NF7118_low_1
Description: NF7118
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7118_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 374; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 186 - 567
Target Start/End: Complemental strand, 25379115 - 25378734
Alignment:
| Q |
186 |
tactactgctactagctccgtgtcagcgatctctgaggacccttcttcaaaccaatcttcctttgttttttctaacctatctcatgaaaattcatcatca |
285 |
Q |
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| T |
25379115 |
tactactgctactagctccgtgtcagcgatctctgaggacccttcttcaaaccaatcttcctttgttttttctaacctatctcatgaaaattcatcatca |
25379016 |
T |
|
| Q |
286 |
ccacttatatctgaatcttatgatgatgaacttctcttcatgcaacaacttttcaaggtgaataataatgctgaacctgttaacccctactccaagaaac |
385 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25379015 |
ccacttatatctgaatcttatgatgatgaacttctcttcatgcagcaacttttcaaggtgaataataatgctgaacctgttaacccctactccaagaaac |
25378916 |
T |
|
| Q |
386 |
cctcttcaaactcttatccattggattattcttcccaaactaacagtaatcagattctccctgatgttactgattgtggatttgttcattccaatccttc |
485 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25378915 |
cctcttcaaactcttatccattggattattcttcccaaactaacagtaatcagattctccctgatgttactgattgtggatttgttcattccaatccttc |
25378816 |
T |
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| Q |
486 |
caattaccctaagccaaattcacaaaacaacatgtacttgagtacttcttcgacacctatgatgaattaccttaattctgac |
567 |
Q |
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| T |
25378815 |
caattaccctaagccaaattcacaaaacaacatgtacttgagtacttcttccacacctatgatgaattaccttaattctgac |
25378734 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 184; E-Value: 3e-99
Query Start/End: Original strand, 8 - 195
Target Start/End: Complemental strand, 25379326 - 25379139
Alignment:
| Q |
8 |
tagcagagagaattcctggaagaactgagaatgcaataaagaatcattggaatgcaacaaaaaggagacaaaattcaaggagaaagaacaaaaggcctca |
107 |
Q |
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| T |
25379326 |
tagcaaagagaattcctggaagaactgagaatgcaataaagaatcattggaatgcaacaaaaaggagacaaaattcaaggagaaagaacaaaaggcctca |
25379227 |
T |
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| Q |
108 |
aaccactgatggtaaaccacaatcttctattcttcaagactatatcaaaactttgactactcaaaaagcgttcatcagtactactgct |
195 |
Q |
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| T |
25379226 |
aaccactgatggtaaaccacaatcttctattcttcaagactatatcaaaactttgactactcaaaaagcgttcatcagtactactgct |
25379139 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 52; Significance: 2e-20; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 19 - 98
Target Start/End: Complemental strand, 29671268 - 29671189
Alignment:
| Q |
19 |
attcctggaagaactgagaatgcaataaagaatcattggaatgcaacaaaaaggagacaaaattcaaggagaaagaacaa |
98 |
Q |
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| T |
29671268 |
attccaggaagaactgaaaatgccataaaaaatcattggaatgccacaaaaagaagacaaaattcaagaagaaagaacaa |
29671189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 25 - 68
Target Start/End: Original strand, 43866521 - 43866564
Alignment:
| Q |
25 |
ggaagaactgagaatgcaataaagaatcattggaatgcaacaaa |
68 |
Q |
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||||||||||||||||||||||| || ||||||||||||||||| |
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| T |
43866521 |
ggaagaactgagaatgcaataaaaaaccattggaatgcaacaaa |
43866564 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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