View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7118_low_11 (Length: 387)
Name: NF7118_low_11
Description: NF7118
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7118_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 281; Significance: 1e-157; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 19 - 380
Target Start/End: Complemental strand, 362555 - 362211
Alignment:
| Q |
19 |
ttatctggaatgtcccttatctcaccaaccgaacgcgagacaaatagaataaaatacggattaaatgtacttagttaggaagatgtttttataattgttg |
118 |
Q |
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| T |
362555 |
ttatctggaatgtctcttatctcaccaaccgaacgcgagacaaatagaataaaatacggattaaatgtacttag-----aagatgtttttataattgttg |
362461 |
T |
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| Q |
119 |
aacttttcaatatccctattttgttggaacaggtagaatacttataatctcaaatttagcacctatcgatctgaaatcgtgaaatactgcaatatcccta |
218 |
Q |
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| T |
362460 |
aacttttcaatatccctattttgttggaacaggtagaatacttataatctcaaatttagcacctatcgatctgaaatcgtgaaatactgcaatatcccta |
362361 |
T |
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| Q |
219 |
ttttgttggaactttgaaatactattattcatgaccgatctcagacacttgaaaaaacacttgaaaaaggtgacatgtttattgtattggagtttgatga |
318 |
Q |
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| T |
362360 |
ttttgttggaactttgaaatactattattcatgaccgatctcaaacacttga------------aaaaggtgacatgtttattgtattggagtttgatga |
362273 |
T |
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| Q |
319 |
agtcacaatccctattatgcctcaactaaatttgattacatacacatggccataatccattt |
380 |
Q |
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||||||||||||||||||| |||||| |||||||||| |||||||||||||||||||||||| |
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| T |
362272 |
agtcacaatccctattatgactcaaccaaatttgatttcatacacatggccataatccattt |
362211 |
T |
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