View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7118_low_15 (Length: 282)

Name: NF7118_low_15
Description: NF7118
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7118_low_15
NF7118_low_15
[»] chr1 (3 HSPs)
chr1 (1-261)||(24426344-24426604)
chr1 (72-148)||(37396141-37396217)
chr1 (72-145)||(34934032-34934105)
[»] chr7 (2 HSPs)
chr7 (1-261)||(31488985-31489235)
chr7 (72-145)||(32197190-32197263)
[»] scaffold0517 (1 HSPs)
scaffold0517 (72-148)||(10997-11073)


Alignment Details
Target: chr1 (Bit Score: 237; Significance: 1e-131; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 261
Target Start/End: Complemental strand, 24426604 - 24426344
Alignment:
Q  1 aagggtagtaattacacatctgagaaatgaattgggggatgaagatgatgaatttgatgatcaaactcaataacaagcatcactgtccagatcgatcaga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24426604 aagggtagtaattacacatctgagaaatgaattgggggatgaagatgatgaatttgatgatcaaactcaataacaagcatcactgtccagatcgatcaga 24426505  T
Q  101 aaaccagatagtgtattgaagaggaaacaagaaacaaatcgaacaaaacacacctagaagcataaacgaatatcaaaatagaagatgaagatctgggttt 200  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| ||| ||||||||||||||||||||||||| |||||||    
T  24426504 aaaccagatagtgtattgaagaggaaacaagaaacaaattgaacaaaacacacccagaagcagaaatgaatatcaaaatagaagatgaagatatgggttt 24426405  T
Q  201 aaacccacaccattttcccgaatttcaatttggatttggatgaattgatgaagatgaagat 261  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  24426404 aaacccacaccattttccagaatttcaatttggatttggatgaattgatgaagatgaagat 24426344  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 72 - 148
Target Start/End: Original strand, 37396141 - 37396217
Alignment:
Q  72 aacaagcatcactgtccagatcgatcagaaaaccagatagtgtattgaagaggaaacaagaaacaaatcgaacaaaa 148  Q
    |||||||| ||||  |||||| || |||||||||| || || ||||||||||||||||||||| | |||||||||||    
T  37396141 aacaagcaacactaaccagattgaacagaaaaccaaatcgtatattgaagaggaaacaagaaatagatcgaacaaaa 37396217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 72 - 145
Target Start/End: Original strand, 34934032 - 34934105
Alignment:
Q  72 aacaagcatcactgtccagatcgatcagaaaaccagatagtgtattgaagaggaaacaagaaacaaatcgaaca 145  Q
    |||||||| ||||  |||||| || |||||||||| || || ||||||||||||||||| ||| | ||||||||    
T  34934032 aacaagcaacactaaccagattgaacagaaaaccaaatcgtatattgaagaggaaacaataaatagatcgaaca 34934105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 79; Significance: 6e-37; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 1 - 261
Target Start/End: Complemental strand, 31489235 - 31488985
Alignment:
Q  1 aagggtagtaattacacatctgagaaatgaattgggggatgaagatgatgaatttgatgatcaaactcaataacaagcatcactgtccagatcgatcaga 100  Q
    |||||||||||||||| ||||||||||||||||||||||||||         ||||| |||| ||||||||||||||||||||  |||| || ||| |||    
T  31489235 aagggtagtaattacatatctgagaaatgaattgggggatgaa---------tttgaagatcgaactcaataacaagcatcacaatccaaattgattaga 31489145  T
Q  101 aaaccagatagtgtattgaagaggaaacaagaaacaaatcgaacaaaacacacctagaagcataaacgaatatcaaaatagaa------gatgaa----g 190  Q
    |||||| |||||||||||||||||||||||||            |||||||||| ||||||| |||| |||||||||||||||      ||||||    |    
T  31489144 aaaccaaatagtgtattgaagaggaaacaaga------------aaaacacaccgagaagcagaaacaaatatcaaaatagaagatttggatgaatttcg 31489057  T
Q  191 atctgg-gtttaaacccacaccattttcccgaatttcaatttggatttggatgaattgatgaagatgaagat 261  Q
    ||||||  |||  |||||||||| || || ||||||||||||||||||||||||||||||||||||||||||    
T  31489056 atctggattttcgacccacaccagttaccagaatttcaatttggatttggatgaattgatgaagatgaagat 31488985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 72 - 145
Target Start/End: Original strand, 32197190 - 32197263
Alignment:
Q  72 aacaagcatcactgtccagatcgatcagaaaaccagatagtgtattgaagaggaaacaagaaacaaatcgaaca 145  Q
    |||||||| ||||  |||||| || |||||||||| || || ||||||||||||||||||||| | ||||||||    
T  32197190 aacaagcaacactaaccagattgaacagaaaaccaaatcgtatattgaagaggaaacaagaaatagatcgaaca 32197263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0517 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0517
Description:

Target: scaffold0517; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 72 - 148
Target Start/End: Complemental strand, 11073 - 10997
Alignment:
Q  72 aacaagcatcactgtccagatcgatcagaaaaccagatagtgtattgaagaggaaacaagaaacaaatcgaacaaaa 148  Q
    |||||||| ||||  |||||| || |||||||||| || || ||||||||||||||||||||| | |||||||||||    
T  11073 aacaagcaacactaaccagattgaacagaaaaccaaatcgtatattgaagaggaaacaagaaatagatcgaacaaaa 10997  T

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