View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7118_low_16 (Length: 263)

Name: NF7118_low_16
Description: NF7118
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7118_low_16
NF7118_low_16
[»] chr8 (5 HSPs)
chr8 (17-253)||(29115428-29115665)
chr8 (17-252)||(24423256-24423482)
chr8 (193-253)||(9818241-9818301)
chr8 (193-253)||(21231912-21231972)
chr8 (193-253)||(9881119-9881179)
[»] chr7 (7 HSPs)
chr7 (18-255)||(31211120-31211350)
chr7 (17-222)||(46002565-46002764)
chr7 (150-253)||(46002764-46002867)
chr7 (193-252)||(8311763-8311822)
chr7 (188-239)||(9745169-9745220)
chr7 (193-253)||(10530204-10530264)
chr7 (193-253)||(29587606-29587666)
[»] chr3 (4 HSPs)
chr3 (145-251)||(11650541-11650647)
chr3 (176-243)||(19544707-19544773)
chr3 (193-252)||(52641395-52641454)
chr3 (193-239)||(29453693-29453738)
[»] chr1 (3 HSPs)
chr1 (195-255)||(24304411-24304471)
chr1 (193-253)||(51443589-51443649)
chr1 (193-253)||(31654638-31654698)
[»] chr2 (3 HSPs)
chr2 (198-252)||(22403780-22403834)
chr2 (193-253)||(27977214-27977274)
chr2 (193-253)||(28063742-28063802)
[»] scaffold0022 (1 HSPs)
scaffold0022 (193-253)||(2054-2114)
[»] scaffold0259 (1 HSPs)
scaffold0259 (193-252)||(2566-2625)
[»] chr5 (1 HSPs)
chr5 (214-255)||(18927186-18927227)
[»] scaffold0016 (1 HSPs)
scaffold0016 (193-253)||(107887-107947)
[»] chr4 (1 HSPs)
chr4 (193-253)||(41943081-41943141)


Alignment Details
Target: chr8 (Bit Score: 189; Significance: 1e-102; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 17 - 253
Target Start/End: Original strand, 29115428 - 29115665
Alignment:
Q  17 ataaaattctcaatttcacatatcaacaatcatatatataaatcaacaaattaccaattccacaaatcaacaatcatacgtataatgttatcaaaattca 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  29115428 ataaaattctcaatttcacatatcaacaatcatatatataaatcaacaaattaccaattccgcaaatcaacaatcatacgtataatgttatcaaaattca 29115527  T
Q  117 cctattctacaaaatcaannnnnnnaacaaaattactaaacaaaaattgttatatctattaataataattcatatc-ttcactcatccatcgaatcatga 215  Q
    ||||||| ||||||||||       |||||||||||||||||| ||||||||||| |||||||||||||| ||||| |||||||||||||||||||||||    
T  29115528 cctattcaacaaaatcaatttttttaacaaaattactaaacaacaattgttatatttattaataataattaatatctttcactcatccatcgaatcatga 29115627  T
Q  216 agcatatcaaattcaatatcataacctactattttcat 253  Q
    ||||||||||||||||||||||||||||||||||||||    
T  29115628 agcatatcaaattcaatatcataacctactattttcat 29115665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 17 - 252
Target Start/End: Complemental strand, 24423482 - 24423256
Alignment:
Q  17 ataaaattctcaatttcacatatcaacaatcatatatataaatcaacaaattaccaattccacaaatcaacaatcatacgtataatgttatcaaaattca 116  Q
    |||||| || ||||| | ||||| |||||||||||| ||  |||||||||||||||||| | ||| | | ||||||||| |||||  |||||||||||||    
T  24423482 ataaaaatcacaattccgcatattaacaatcatatacatcgatcaacaaattaccaatttcgcaactaatcaatcatacttataa--ttatcaaaattca 24423385  T
Q  117 cctattctacaaaatcaannnnnnnaacaaaa-ttactaaacaaaaattgttatatctattaataataattcatatcttcactcatccatcgaatcatga 215  Q
    | |||||| | || ||||       ||||||| ||||||||||| |||| |||||| |||||||||  ||| || ||||||||||||||  |||| | ||    
T  24423384 catattcttc-aattcaa------taacaaaatttactaaacaacaattattatatttattaataaccattaatctcttcactcatccaatgaat-aaga 24423293  T
Q  216 agcatatcaaattcaatatcataacctactattttca 252  Q
    ||||||  |||||||||||||||| |||  |||||||    
T  24423292 agcatacaaaattcaatatcataaactatcattttca 24423256  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 193 - 253
Target Start/End: Original strand, 9818241 - 9818301
Alignment:
Q  193 ttcactcatccatcgaatcatgaagcatatcaaattcaatatcataacctactattttcat 253  Q
    |||||||||||||  ||||| |||||||||||||||||| ||||||| |||  ||||||||    
T  9818241 ttcactcatccattaaatcaagaagcatatcaaattcaacatcataatctatcattttcat 9818301  T

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Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 193 - 253
Target Start/End: Original strand, 21231912 - 21231972
Alignment:
Q  193 ttcactcatccatcgaatcatgaagcatatcaaattcaatatcataacctactattttcat 253  Q
    |||||||||||||  ||||| |||||||||||||||||| ||||||| |||  ||||||||    
T  21231912 ttcactcatccattaaatcaagaagcatatcaaattcaacatcataatctatcattttcat 21231972  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 193 - 253
Target Start/End: Complemental strand, 9881179 - 9881119
Alignment:
Q  193 ttcactcatccatcgaatcatgaagcatatcaaattcaatatcataacctactattttcat 253  Q
    ||||||||||||| |||||   |||||||||||||| || ||||||| ||| |||||||||    
T  9881179 ttcactcatccattgaatcgataagcatatcaaatttaagatcataatctattattttcat 9881119  T

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Target: chr7 (Bit Score: 90; Significance: 1e-43; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 18 - 255
Target Start/End: Complemental strand, 31211350 - 31211120
Alignment:
Q  18 taaaattctcaatttcacatatcaacaatcatatatataaatcaacaaattaccaattccacaaatcaacaatcatacgtataatgttatcaaaattcac 117  Q
    |||||| | |||||||||||||||||||||||||| || ||||||||||||||||||| |||||   | |||||||| |||||||  |||||||||||||    
T  31211350 taaaatccacaatttcacatatcaacaatcatatacatcaatcaacaaattaccaatttcacaacaaatcaatcataagtataat--tatcaaaattcac 31211253  T
Q  118 ctattctacaaaatcaannnnnnnaacaaaatt-actaaacaaaaattgttatatctattaataataattcatatcttcactcatccatcgaatcatgaa 216  Q
     ||||||  ||||||||       ||||||||| ||||||||| |||| |||||| ||||||||| |||| || ||||||| |||| ||  ||||| |||    
T  31211252 atattctttaaaatcaat------aacaaaatttactaaacaacaattcttatatttattaataagaattaatctcttcacgcatctattaaatcaagaa 31211159  T
Q  217 gcatatcaaattcaatatcataacctactattttcatct 255  Q
    |||||||||||| |||||||||||||| |||||||||||    
T  31211158 gcatatcaaatttaatatcataacctattattttcatct 31211120  T

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Target: chr7; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 17 - 222
Target Start/End: Original strand, 46002565 - 46002764
Alignment:
Q  17 ataaaattctcaatttcacatatcaacaatcatatatataaatc-aacaaattaccaattccacaaatcaacaatcatacgtataatgttatcaaaattc 115  Q
    ||||||||  ||||||||| |||||||||||||||| ||||||| ||||||||||||||| ||||| | | ||||||||| |||||  ||||||||||||    
T  46002565 ataaaatttacaatttcacgtatcaacaatcatatacataaatcaaacaaattaccaatttcacaactaatcaatcatacatataa--ttatcaaaattc 46002662  T
Q  116 acctattctacaaaatcaannnnnnnaac-aaaattactaaacaaaaattgttatatctattaataataattcatatcttcactcatccatcgaatcatg 214  Q
    || |||||| |||||||||       ||| ||||||||||| ||| |||| |||||| ||||||||| |||| || | |||||||||| || |||||| |    
T  46002663 acatattcttcaaaatcaa------taacaaaaattactaaccaacaattcttatatttattaataacaattaatcttttcactcatcaatagaatcaag 46002756  T

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Target: chr7; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 150 - 253
Target Start/End: Original strand, 46002764 - 46002867
Alignment:
Q  150 tactaaacaaaaattgttatatctattaataataattcatatcttcactcatccatcgaatcatgaagcatatcaaattcaatatcataacctactattt 249  Q
    |||||| ||| |||| |||||| ||||||||| |||| || | ||||||||||||| |||||| ||||||||||||||||||||||| |||||| |||||    
T  46002764 tactaaccaacaattcttatatttattaataacaattaatcttttcactcatccattgaatcaagaagcatatcaaattcaatatcacaacctattattt 46002863  T
Q  250 tcat 253  Q
    ||||    
T  46002864 tcat 46002867  T

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Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 193 - 252
Target Start/End: Complemental strand, 8311822 - 8311763
Alignment:
Q  193 ttcactcatccatcgaatcatgaagcatatcaaattcaatatcataacctactattttca 252  Q
    ||||| |||||||||||||| ||||||| |||||||||| ||||||| ||| ||||||||    
T  8311822 ttcacccatccatcgaatcaagaagcatgtcaaattcaacatcataatctattattttca 8311763  T

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Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 188 - 239
Target Start/End: Complemental strand, 9745220 - 9745169
Alignment:
Q  188 atatcttcactcatccatcgaatcatgaagcatatcaaattcaatatcataa 239  Q
    |||| ||||||||||||| |||||| |||||||||||||||||| |||||||    
T  9745220 atattttcactcatccattgaatcaagaagcatatcaaattcaacatcataa 9745169  T

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Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 193 - 253
Target Start/End: Original strand, 10530204 - 10530264
Alignment:
Q  193 ttcactcatccatcgaatcatgaagcatatcaaattcaatatcataacctactattttcat 253  Q
    |||||||||||||  ||||| |||||||||||||||||| ||||||| |||  ||||||||    
T  10530204 ttcactcatccattaaatcaagaagcatatcaaattcaacatcataatctatcattttcat 10530264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 193 - 253
Target Start/End: Complemental strand, 29587666 - 29587606
Alignment:
Q  193 ttcactcatccatcgaatcatgaagcatatcaaattcaatatcataacctactattttcat 253  Q
    |||||||||||||  ||||| |||||||||||||||||| ||||||| |||  ||||||||    
T  29587666 ttcactcatccattaaatcaagaagcatatcaaattcaacatcataatctatcattttcat 29587606  T

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Target: chr3 (Bit Score: 55; Significance: 1e-22; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 145 - 251
Target Start/End: Original strand, 11650541 - 11650647
Alignment:
Q  145 aaaattactaaacaaaaattgttatatctattaataataattcatatcttcactcatccatcgaatcatgaagcatatcaaattcaatatcataacctac 244  Q
    ||||||||||||||| |||| |||||| ||||||||| |||| || |||| ||||||| || |||||| ||||||||||||||||||||||| |||| |     
T  11650541 aaaattactaaacaacaattcttatatttattaataacaattaatgtcttaactcatcaattgaatcaagaagcatatcaaattcaatatcacaaccaat 11650640  T
Q  245 tattttc 251  Q
    |||||||    
T  11650641 tattttc 11650647  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 176 - 243
Target Start/End: Original strand, 19544707 - 19544773
Alignment:
Q  176 taataataattcatatcttcactcatccatcgaatcatgaagcatatcaaattcaatatcataaccta 243  Q
    ||||||||||  || | ||||||||||||||||||||  ||||||||| ||||||| |||||||||||    
T  19544707 taataataataaatcttttcactcatccatcgaatcaataagcatatc-aattcaacatcataaccta 19544773  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 193 - 252
Target Start/End: Original strand, 52641395 - 52641454
Alignment:
Q  193 ttcactcatccatcgaatcatgaagcatatcaaattcaatatcataacctactattttca 252  Q
    ||||||||||||| || ||| |||||||||||||||||| ||||||| |||  |||||||    
T  52641395 ttcactcatccattgagtcaagaagcatatcaaattcaacatcataatctatcattttca 52641454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 193 - 239
Target Start/End: Complemental strand, 29453738 - 29453693
Alignment:
Q  193 ttcactcatccatcgaatcatgaagcatatcaaattcaatatcataa 239  Q
    ||||||||||||| |||||| ||||||||||||||||||| ||||||    
T  29453738 ttcactcatccat-gaatcaagaagcatatcaaattcaatgtcataa 29453693  T

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Target: chr1 (Bit Score: 45; Significance: 1e-16; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 195 - 255
Target Start/End: Original strand, 24304411 - 24304471
Alignment:
Q  195 cactcatccatcgaatcatgaagcatatcaaattcaatatcataacctactattttcatct 255  Q
    |||||||| || ||||||||||||||||||||| ||||||||||||||| |||||||||||    
T  24304411 cactcatcgatagaatcatgaagcatatcaaatccaatatcataacctattattttcatct 24304471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 193 - 253
Target Start/End: Original strand, 51443589 - 51443649
Alignment:
Q  193 ttcactcatccatcgaatcatgaagcatatcaaattcaatatcataacctactattttcat 253  Q
    |||||||||||||  ||||| |||||||||||||||||| ||||||| |||  ||||||||    
T  51443589 ttcactcatccattaaatcaagaagcatatcaaattcaacatcataatctatcattttcat 51443649  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 193 - 253
Target Start/End: Original strand, 31654638 - 31654698
Alignment:
Q  193 ttcactcatccatcgaatcatgaagcatatcaaattcaatatcataacctactattttcat 253  Q
    |||||||||||||  ||||| |||||||||||||| ||| ||||||| |||  ||||||||    
T  31654638 ttcactcatccattaaatcaagaagcatatcaaatccaacatcataatctatcattttcat 31654698  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 198 - 252
Target Start/End: Complemental strand, 22403834 - 22403780
Alignment:
Q  198 tcatccatcgaatcatgaagcatatcaaattcaatatcataacctactattttca 252  Q
    ||||||||||||||| |||||||||||||||||| ||||||| ||| ||||||||    
T  22403834 tcatccatcgaatcaagaagcatatcaaattcaacatcataatctattattttca 22403780  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 193 - 253
Target Start/End: Original strand, 27977214 - 27977274
Alignment:
Q  193 ttcactcatccatcgaatcatgaagcatatcaaattcaatatcataacctactattttcat 253  Q
    |||||||||||||  ||||| |||||||||||||||||| ||||||| |||  ||||||||    
T  27977214 ttcactcatccattaaatcaagaagcatatcaaattcaacatcataatctatcattttcat 27977274  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 193 - 253
Target Start/End: Original strand, 28063742 - 28063802
Alignment:
Q  193 ttcactcatccatcgaatcatgaagcatatcaaattcaatatcataacctactattttcat 253  Q
    |||||||||||||  ||||| |||||||||||||||||| ||||||| |||  ||||||||    
T  28063742 ttcactcatccattaaatcaagaagcatatcaaattcaacatcataatctatcattttcat 28063802  T

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Target: scaffold0022 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 193 - 253
Target Start/End: Complemental strand, 2114 - 2054
Alignment:
Q  193 ttcactcatccatcgaatcatgaagcatatcaaattcaatatcataacctactattttcat 253  Q
    |||||||||||||  ||||| |||||||||||||||||| ||||||| ||| | |||||||    
T  2114 ttcactcatccattaaatcaagaagcatatcaaattcaacatcataatctattgttttcat 2054  T

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Target: scaffold0259 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0259
Description:

Target: scaffold0259; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 193 - 252
Target Start/End: Original strand, 2566 - 2625
Alignment:
Q  193 ttcactcatccatcgaatcatgaagcatatcaaattcaatatcataacctactattttca 252  Q
    |||||||||||||  ||||| ||||||| |||||||||| |||||||||||  |||||||    
T  2566 ttcactcatccattaaatcaagaagcatgtcaaattcaacatcataacctatcattttca 2625  T

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Target: chr5 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 214 - 255
Target Start/End: Original strand, 18927186 - 18927227
Alignment:
Q  214 gaagcatatcaaattcaatatcataacctactattttcatct 255  Q
    ||||||||||||||||||  |||||||||| |||||||||||    
T  18927186 gaagcatatcaaattcaacttcataacctattattttcatct 18927227  T

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Target: scaffold0016 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 193 - 253
Target Start/End: Complemental strand, 107947 - 107887
Alignment:
Q  193 ttcactcatccatcgaatcatgaagcatatcaaattcaatatcataacctactattttcat 253  Q
    |||||||||||||  ||||| | |||||||||||||||| ||||||| |||  ||||||||    
T  107947 ttcactcatccattaaatcaaggagcatatcaaattcaacatcataatctatcattttcat 107887  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 193 - 253
Target Start/End: Original strand, 41943081 - 41943141
Alignment:
Q  193 ttcactcatccatcgaatcatgaagcatatcaaattcaatatcataacctactattttcat 253  Q
    |||||||||||||  ||||| |||||||||||||||||| | ||||| |||  ||||||||    
T  41943081 ttcactcatccattaaatcaagaagcatatcaaattcaacaacataatctatcattttcat 41943141  T

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