View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7118_low_19 (Length: 253)
Name: NF7118_low_19
Description: NF7118
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7118_low_19 |
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Alignment Details
Target: chr4 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 18959768 - 18959538
Alignment:
| Q |
1 |
tttgatgatatatctcaaatacttttgcatataaaattgtattgaccttgtatgcactcttcttcatatgatagctctaaagacatttgttgtgttcgga |
100 |
Q |
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| T |
18959768 |
tttgatgatatatcttaaatacttttgcatacaaaattgtattgaccttgtatgcactcttc---atatgatagctctaaagacatttgttgtgttcgga |
18959672 |
T |
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| Q |
101 |
cggaagttcgaatttacaattttttactgtgcgagattctcgtcactagattatttgacaagaagaaaatgtgttgatagtattacacagtcaaatattt |
200 |
Q |
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| T |
18959671 |
cggaagttcgaatttacaattttttactgtgcgagattctcgtcactagattatttgacaagaagaaaatgtgttgatagtattacacagtcaaatattt |
18959572 |
T |
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| Q |
201 |
tgcactaagcatacaagtgaattaagctcctacc |
234 |
Q |
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| T |
18959571 |
tgtactaagcatacaagtgaattaagctcctacc |
18959538 |
T |
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