View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7118_low_24 (Length: 246)
Name: NF7118_low_24
Description: NF7118
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7118_low_24 |
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Alignment Details
Target: chr6 (Bit Score: 227; Significance: 1e-125; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 12425616 - 12425390
Alignment:
| Q |
1 |
tacttcagcaataacaatagagtgggctatgtcagagttaatgaaaaacccaagagtgatgaagaaggcacaagctgaaataagagaagctgttaaaggt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12425616 |
tacttcagcaataacaatagagtgggctatgtcagagttaatgaaaaacccaagagtgatgaagaaggcacaagctgaaataagagaagctgttaaaggt |
12425517 |
T |
|
| Q |
101 |
aagaagagaatatatgagagtgatctacataaacttgggtacttgaagttagtgatcaaagaaaccctgaggttacacccacctgctacattgctcatga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12425516 |
aagaagagaatatatgagagtgatctacataaacttgggtacttgaagttagtgatcaaagaaaccctgaggttacacccacctgctacattgctcatga |
12425417 |
T |
|
| Q |
201 |
gagaatgcagggaagcgtgcaacatag |
227 |
Q |
| |
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||||||||||||||||||||||||||| |
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| T |
12425416 |
gagaatgcagggaagcgtgcaacatag |
12425390 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 3 - 227
Target Start/End: Original strand, 12268071 - 12268295
Alignment:
| Q |
3 |
cttcagcaataacaatagagtgggctatgtcagagttaatgaaaaacccaagagtgatgaagaaggcacaagctgaaataagagaagctgttaaaggtaa |
102 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||| || ||| |||||||||||||||||||||| | ||||||||| |
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| T |
12268071 |
cttcagcaataacaatagattgggctatgtcagagttaatgaaaaaccctagagtgaggatgaaagcacaagctgaaataagagaagtttgtaaaggtaa |
12268170 |
T |
|
| Q |
103 |
gaagagaatatatgagagtgatctacataaacttgggtacttgaagttagtgatcaaagaaaccctgaggttacacccacctgctacattgctcatgaga |
202 |
Q |
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||||||||| ||||| |||||| | ||| ||||| | |||||||||| ||||||||||||||||||||||||||||||||||| | || | || | ||| |
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| T |
12268171 |
gaagagaatttatgaaagtgatttgcatgaacttagttacttgaagtcagtgatcaaagaaaccctgaggttacacccacctggtgcaatacttacaaga |
12268270 |
T |
|
| Q |
203 |
gaatgcagggaagcgtgcaacatag |
227 |
Q |
| |
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|||||||||||||| |||||||||| |
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| T |
12268271 |
gaatgcagggaagcatgcaacatag |
12268295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 135; Significance: 2e-70; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 55955289 - 55955063
Alignment:
| Q |
1 |
tacttcagcaataacaatagagtgggctatgtcagagttaatgaaaaacccaagagtgatgaagaaggcacaagctgaaataagagaagctgttaaaggt |
100 |
Q |
| |
|
||||||||||| | |||||||||||||||||||||||| ||||||||| |||||||||||||||| |||||| | ||||||||||||||||||||||| |
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| T |
55955289 |
tacttcagcaacagtaatagagtgggctatgtcagagttgatgaaaaactcaagagtgatgaagaaagcacaatccgaaataagagaagctgttaaaggg |
55955190 |
T |
|
| Q |
101 |
aagaagagaatatatgagagtgatctacataaacttgggtacttgaagttagtgatcaaagaaaccctgaggttacacccacctgctacattgctcatga |
200 |
Q |
| |
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|| ||||||||||||||||||||||||||| ||||| | |||||||||| |||||||||||||||| ||||||||||||||||| ||| ||||| | |
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| T |
55955189 |
aaaaagagaatatatgagagtgatctacatgaacttagttacttgaagtcagtgatcaaagaaaccatgaggttacacccaccttttactttgcttccaa |
55955090 |
T |
|
| Q |
201 |
gagaatgcagggaagcgtgcaacatag |
227 |
Q |
| |
|
|||||||||||||||| |||||||||| |
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| T |
55955089 |
gagaatgcagggaagcttgcaacatag |
55955063 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 55958845 - 55958619
Alignment:
| Q |
1 |
tacttcagcaataacaatagagtgggctatgtcagagttaatgaaaaacccaagagtgatgaagaaggcacaagctgaaataagagaagctgttaaaggt |
100 |
Q |
| |
|
|||||||||| ||||||||| ||||| ||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||| | |||||||| |
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| T |
55958845 |
tacttcagcaggaacaatagactgggcaatgtcagagttgatgaaaaacccaagagtgatgaagaaggcacaatctgaaataagagaaacctttaaaggt |
55958746 |
T |
|
| Q |
101 |
aagaagagaatatatgagagtgatctacataaacttgggtacttgaagttagtgatcaaagaaaccctgaggttacacccacctgctacattgctcatga |
200 |
Q |
| |
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|| ||||||| |||||||||||||||||| ||||| | |||||||| | ||||||||||||||| |||||||||| ||||||||||| ||||| || | |
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| T |
55958745 |
aaaaagagaacatatgagagtgatctacaagaacttagttacttgaattcagtgatcaaagaaactatgaggttacatccacctgctactttgcttataa |
55958646 |
T |
|
| Q |
201 |
gagaatgcagggaagcgtgcaacatag |
227 |
Q |
| |
|
|||||||||||||||| |||||||||| |
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| T |
55958645 |
gagaatgcagggaagcatgcaacatag |
55958619 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 60; Significance: 1e-25; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 13 - 184
Target Start/End: Original strand, 7141377 - 7141548
Alignment:
| Q |
13 |
aacaatagagtgggctatgtcagagttaatgaaaaacccaagagtgatgaagaaggcacaagctgaaataagagaagctgttaaaggtaagaagagaata |
112 |
Q |
| |
|
||||||||| |||||||||||||| | |||||||| |||||||||| | ||||||||||||||||| ||||| |||| | || |||||| | |||| |
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| T |
7141377 |
aacaatagaatgggctatgtcagaaatgatgaaaaatccaagagtgagggagaaggcacaagctgaattaagacaagcattcaatggtaaggaactaata |
7141476 |
T |
|
| Q |
113 |
tatgagagtgatctacataaacttgggtacttgaagttagtgatcaaagaaaccctgaggttacacccacct |
184 |
Q |
| |
|
||||| | |||| || | ||||| | ||||| |||||||||||||||||||| ||||||||||||||||| |
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| T |
7141477 |
tatgaaactgatgtagagaaactaagttacttaaagttagtgatcaaagaaacattgaggttacacccacct |
7141548 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 13 - 184
Target Start/End: Original strand, 7154147 - 7154318
Alignment:
| Q |
13 |
aacaatagagtgggctatgtcagagttaatgaaaaacccaagagtgatgaagaaggcacaagctgaaataagagaagctgttaaaggtaagaagagaata |
112 |
Q |
| |
|
|||||||||||||||||||||||| | |||||||| ||||| |||| | || |||||||||||| |||||||||| | ||||| ||||| | |||| |
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|
| T |
7154147 |
aacaatagagtgggctatgtcagaaatgatgaaaaatccaagtgtgagagaaaaagcacaagctgaactaagagaagcattcaaaggaaagaaaataata |
7154246 |
T |
|
| Q |
113 |
tatgagagtgatctacataaacttgggtacttgaagttagtgatcaaagaaaccctgaggttacacccacct |
184 |
Q |
| |
|
| ||| ||||||| || |||| ||||| |||||||||||||||||||| ||||||||||||||||| |
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|
| T |
7154247 |
tctgaatctgatctaaatgaactaacttactttaagttagtgatcaaagaaacaatgaggttacacccacct |
7154318 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 13 - 90
Target Start/End: Original strand, 7131653 - 7131730
Alignment:
| Q |
13 |
aacaatagagtgggctatgtcagagttaatgaaaaacccaagagtgatgaagaaggcacaagctgaaataagagaagc |
90 |
Q |
| |
|
|||||||| ||||| |||||||| | |||||||||||||| |||||||| |||||||||||||||||||||||||| |
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|
| T |
7131653 |
aacaatagtatgggccatgtcagaactgatgaaaaacccaagtgtgatgaacaaggcacaagctgaaataagagaagc |
7131730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 104 - 227
Target Start/End: Complemental strand, 41795954 - 41795829
Alignment:
| Q |
104 |
aagagaatatatgagagtgatctacataaacttgggtacttgaagttagtgatcaaagaaaccct--gaggttacacccacctgctacattgctcatgag |
201 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||| ||||| |||| ||||||||||||||| | ||||||||| |||||| ||| ||||| || |
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|
| T |
41795954 |
aagagaatatatgagagtgatctacatgaacttggttacttaaagtcagtgatcaaagaaacaatgagaggttacatccaccttttactttgcttccaag |
41795855 |
T |
|
| Q |
202 |
agaatgcagggaagcgtgcaacatag |
227 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
41795854 |
agaatgcagggaagcgtgcaacatag |
41795829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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