View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7118_low_31 (Length: 233)

Name: NF7118_low_31
Description: NF7118
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7118_low_31
NF7118_low_31
[»] chr4 (3 HSPs)
chr4 (7-214)||(10779719-10779929)
chr4 (7-214)||(10973328-10973538)
chr4 (29-93)||(10782148-10782212)
[»] scaffold0155 (2 HSPs)
scaffold0155 (20-170)||(34304-34454)
scaffold0155 (18-123)||(26075-26180)
[»] chr6 (13 HSPs)
chr6 (21-146)||(8843070-8843195)
chr6 (18-166)||(8647426-8647574)
chr6 (18-126)||(8507707-8507815)
chr6 (21-139)||(8514430-8514548)
chr6 (18-115)||(8548760-8548857)
chr6 (18-115)||(8625474-8625571)
chr6 (21-146)||(8527302-8527427)
chr6 (21-146)||(8541062-8541187)
chr6 (18-94)||(5082778-5082854)
chr6 (41-105)||(8627453-8627517)
chr6 (18-77)||(8834279-8834338)
chr6 (91-147)||(8830511-8830567)
chr6 (91-147)||(8834221-8834277)
[»] chr8 (1 HSPs)
chr8 (18-114)||(4538678-4538774)


Alignment Details
Target: chr4 (Bit Score: 157; Significance: 1e-83; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 7 - 214
Target Start/End: Complemental strand, 10779929 - 10779719
Alignment:
Q  7 tgtcgaagaatatgtcatttgcaaagaagcctcaaatccttcatattgtataaatcttctcaactcaaagccaaaaggagcaaaaggtgtag---atctt 103  Q
    |||||||| | |||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||  |||||||||||||||||   |||||    
T  10779929 tgtcgaagtaaatgtcatttgcaaagaagcctcaaatccttcatattgcttaaatcttctcaactcaaagccaggaggagcaaaaggtgtagtagatctt 10779830  T
Q  104 gttcaccttgcatattacacaatcgctgtgcttaataacaattgtaccaacacagttaacctattaagtgaattggttaaaagtgcaaactattatcaaa 203  Q
    ||||||||||||||||||||||| | |||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||    
T  10779829 gttcaccttgcatattacacaattgatgtgcttaataacaattgtaccaacacatttaacctattaaatgaattggttaaaagtgcaaactattatcaaa 10779730  T
Q  204 tatgttcagat 214  Q
    |||||||||||    
T  10779729 tatgttcagat 10779719  T

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Target: chr4; HSP #2
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 7 - 214
Target Start/End: Complemental strand, 10973538 - 10973328
Alignment:
Q  7 tgtcgaagaatatgtcatttgcaaagaagcctcaaatccttcatattgtataaatcttctcaactcaaagccaaaaggagcaaaaggtgtag---atctt 103  Q
    |||||||| | |||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||  |||||||||||||||||   |||||    
T  10973538 tgtcgaagtaaatgtcatttgcaaagaagcctcaaatccttcatattgcttaaatcttctcaactcaaagccaggaggagcaaaaggtgtagtagatctt 10973439  T
Q  104 gttcaccttgcatattacacaatcgctgtgcttaataacaattgtaccaacacagttaacctattaagtgaattggttaaaagtgcaaactattatcaaa 203  Q
    ||||||||||||||||||||||| | |||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||    
T  10973438 gttcaccttgcatattacacaattgatgtgcttaataacaattgtaccaacacatttaacctattaaatgaattggttaaaagtgcaaactattatcaaa 10973339  T
Q  204 tatgttcagat 214  Q
    |||||||||||    
T  10973338 tatgttcagat 10973328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 29 - 93
Target Start/End: Complemental strand, 10782212 - 10782148
Alignment:
Q  29 aaagaagcctcaaatccttcatattgtataaatcttctcaactcaaagccaaaaggagcaaaagg 93  Q
    ||||||||||| ||||||||||||||  |||||||||||||||||||| ||  | ||||||||||    
T  10782212 aaagaagcctccaatccttcatattgcttaaatcttctcaactcaaagtcaggaagagcaaaagg 10782148  T

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Target: scaffold0155 (Bit Score: 67; Significance: 7e-30; HSPs: 2)
Name: scaffold0155
Description:

Target: scaffold0155; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 20 - 170
Target Start/End: Original strand, 34304 - 34454
Alignment:
Q  20 gtcatttgcaaagaagcctcaaatccttcatattgtataaatcttctcaactcaaagccaaaaggagcaaaaggtgtagatcttgttcaccttgcatatt 119  Q
    |||||||| ||||||||| | ||||||||||||||  ||||||||||||||||||| |||  | ||| ||||||||||||||||||| |||||||| | |    
T  34304 gtcatttgtaaagaagcccccaatccttcatattgcttaaatcttctcaactcaaaaccaggacgagtaaaaggtgtagatcttgttaaccttgcagagt 34403  T
Q  120 acacaatcgctgtgcttaataacaattgtaccaacacagttaacctattaa 170  Q
    ||||||| | |||||| ||| ||||||| || |||||| ||||||| ||||    
T  34404 acacaattgatgtgctcaatgacaattggacaaacacatttaacctcttaa 34454  T

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Target: scaffold0155; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 18 - 123
Target Start/End: Complemental strand, 26180 - 26075
Alignment:
Q  18 atgtcatttgcaaagaagcctcaaatccttcatattgtataaatcttctcaactcaaagccaaaaggagcaaaaggtgtagatcttgttcaccttgcata 117  Q
    |||| |||||||||||||| || |||||||||||||||  |||||| |||||||||||||||  ||||||||||  ||||||||||||| | |||||| |    
T  26180 atgttatttgcaaagaagcatccaatccttcatattgttcaaatctcctcaactcaaagccaggaggagcaaaaaatgtagatcttgttgatcttgcaaa 26081  T
Q  118 ttacac 123  Q
    ||||||    
T  26080 ttacac 26075  T

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Target: chr6 (Bit Score: 66; Significance: 3e-29; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 21 - 146
Target Start/End: Original strand, 8843070 - 8843195
Alignment:
Q  21 tcatttgcaaagaagcctcaaatccttcatattgtataaatcttctcaactcaaagccaaaaggagcaaaaggtgtagatcttgttcaccttgcatatta 120  Q
    ||||||||||||||||||| |||||| | ||||||  ||||||||||||||||||| ||  ||||||||||||||||||||||||| | |||||| | ||    
T  8843070 tcatttgcaaagaagcctccaatcctacgtattgttcaaatcttctcaactcaaagtcaggaggagcaaaaggtgtagatcttgttgatcttgcacaata 8843169  T
Q  121 cacaatcgctgtgcttaataacaatt 146  Q
    |||||| | |||||||||| ||||||    
T  8843170 cacaattgatgtgcttaatgacaatt 8843195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 18 - 166
Target Start/End: Complemental strand, 8647574 - 8647426
Alignment:
Q  18 atgtcatttgcaaagaagcctcaaatccttcatattgtataaatcttctcaactcaaagccaaaaggagcaaaaggtgtagatcttgttcaccttgcata 117  Q
    |||||||||||| ||||||||| |||||| ||||||||  |||||||||||||||||||| |  ||| ||||||||||||||||||||  |||||||| |    
T  8647574 atgtcatttgcagagaagcctccaatcctacatattgttcaaatcttctcaactcaaagcaaggaggtgcaaaaggtgtagatcttgtcgaccttgcaga 8647475  T
Q  118 ttacacaatcgctgtgcttaataacaattgtaccaacacagttaaccta 166  Q
     |||||||| | |||||||| | | ||||| |||||||||  |||||||    
T  8647474 atacacaattgatgtgcttagtgagaattggaccaacacatataaccta 8647426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 18 - 126
Target Start/End: Complemental strand, 8507815 - 8507707
Alignment:
Q  18 atgtcatttgcaaagaagcctcaaatccttcatattgtataaatcttctcaactcaaagccaaaaggagcaaaaggtgtagatcttgttcaccttgcata 117  Q
    |||||||||||||||||||||| |||||||||| ||||  |||||||||||||||||| |||  | |||||||| |||||||||||||| | |||||| |    
T  8507815 atgtcatttgcaaagaagcctccaatccttcattttgttcaaatcttctcaactcaaaaccaggatgagcaaaaagtgtagatcttgttgatcttgcaca 8507716  T
Q  118 ttacacaat 126  Q
     ||||||||    
T  8507715 atacacaat 8507707  T

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Target: chr6; HSP #4
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 21 - 139
Target Start/End: Original strand, 8514430 - 8514548
Alignment:
Q  21 tcatttgcaaagaagcctcaaatccttcatattgtataaatcttctcaactcaaagccaaaaggagcaaaaggtgtagatcttgttcaccttgcatatta 120  Q
    ||||||||||||||||||| ||||  || |||||   ||||||||||||||| ||||||  ||| ||||||||||||||||||||| |||||||| | ||    
T  8514430 tcatttgcaaagaagcctctaatcaatcgtattgctcaaatcttctcaactcgaagccaggaggtgcaaaaggtgtagatcttgttgaccttgcacaata 8514529  T
Q  121 cacaatcgctgtgcttaat 139  Q
    |||||| | ||||||||||    
T  8514530 cacaattgatgtgcttaat 8514548  T

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Target: chr6; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 18 - 115
Target Start/End: Original strand, 8548760 - 8548857
Alignment:
Q  18 atgtcatttgcaaagaagcctcaaatccttcatattgtataaatcttctcaactcaaagccaaaaggagcaaaaggtgtagatcttgttcaccttgca 115  Q
    ||||||| ||||| ||||| || |||||||||||||||    ||||||||||||||||||||  |||||||||||||||||||||||| |||||||||    
T  8548760 atgtcatctgcaatgaagcttccaatccttcatattgttcgtatcttctcaactcaaagccaggaggagcaaaaggtgtagatcttgtccaccttgca 8548857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 18 - 115
Target Start/End: Complemental strand, 8625571 - 8625474
Alignment:
Q  18 atgtcatttgcaaagaagcctcaaatccttcatattgtataaatcttctcaactcaaagccaaaaggagcaaaaggtgtagatcttgttcaccttgca 115  Q
    ||||||| ||||| ||||| || |||||||||||||||  | ||||||||||||||||||||  |||||||||||| ||||||||||| |||||||||    
T  8625571 atgtcatctgcaatgaagcttccaatccttcatattgttcatatcttctcaactcaaagccaggaggagcaaaaggcgtagatcttgtccaccttgca 8625474  T

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Target: chr6; HSP #7
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 21 - 146
Target Start/End: Original strand, 8527302 - 8527427
Alignment:
Q  21 tcatttgcaaagaagcctcaaatccttcatattgtataaatcttctcaactcaaagccaaaaggagcaaaaggtgtagatcttgttcaccttgcatatta 120  Q
    |||||||||||||||| || |||||||| |||||   |||||||||||| || ||||||  ||| ||||||||||||||||||||  ||||||||   ||    
T  8527302 tcatttgcaaagaagcatccaatccttcgtattgctcaaatcttctcaattcgaagccaggaggtgcaaaaggtgtagatcttgtcgaccttgcacgata 8527401  T
Q  121 cacaatcgctgtgcttaataacaatt 146  Q
    |||||| | |||||||||||| ||||    
T  8527402 cacaattgatgtgcttaataataatt 8527427  T

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Target: chr6; HSP #8
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 21 - 146
Target Start/End: Complemental strand, 8541187 - 8541062
Alignment:
Q  21 tcatttgcaaagaagcctcaaatccttcatattgtataaatcttctcaactcaaagccaaaaggagcaaaaggtgtagatcttgttcaccttgcatatta 120  Q
    |||||||||||||||| || |||||||| |||||   |||||||||||| || ||||||  ||| ||||||||||||||||||||  ||||||||   ||    
T  8541187 tcatttgcaaagaagcatccaatccttcgtattgctcaaatcttctcaattcgaagccaggaggtgcaaaaggtgtagatcttgtcgaccttgcacgata 8541088  T
Q  121 cacaatcgctgtgcttaataacaatt 146  Q
    |||||| | |||||||||||| ||||    
T  8541087 cacaattgatgtgcttaataataatt 8541062  T

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Target: chr6; HSP #9
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 18 - 94
Target Start/End: Original strand, 5082778 - 5082854
Alignment:
Q  18 atgtcatttgcaaagaagcctcaaatccttcatattgtataaatcttctcaactcaaagccaaaaggagcaaaaggt 94  Q
    |||||||||||||||||||||| ||||  |||||||||  ||||||||||||||||||||||  |||||||||||||    
T  5082778 atgtcatttgcaaagaagcctccaatcaatcatattgttcaaatcttctcaactcaaagccaggaggagcaaaaggt 5082854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 41 - 105
Target Start/End: Original strand, 8627453 - 8627517
Alignment:
Q  41 aatccttcatattgtataaatcttctcaactcaaagccaaaaggagcaaaaggtgtagatcttgt 105  Q
    |||||||||||||||  ||||||||||||||||||||||   || ||||||||||||||||||||    
T  8627453 aatccttcatattgttcaaatcttctcaactcaaagccagttggtgcaaaaggtgtagatcttgt 8627517  T

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Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 77
Target Start/End: Complemental strand, 8834338 - 8834279
Alignment:
Q  18 atgtcatttgcaaagaagcctcaaatccttcatattgtataaatcttctcaactcaaagc 77  Q
    |||||||||||| |||| ||||  ||| ||||||||||  ||||||||||||||||||||    
T  8834338 atgtcatttgcagagaatcctccgatcattcatattgttcaaatcttctcaactcaaagc 8834279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 91 - 147
Target Start/End: Complemental strand, 8830567 - 8830511
Alignment:
Q  91 aggtgtagatcttgttcaccttgcatattacacaatcgctgtgcttaataacaattg 147  Q
    |||||||||||||||  |||||||| | |||||||| | |||||| |||||||||||    
T  8830567 aggtgtagatcttgtgaaccttgcacaatacacaattgatgtgctcaataacaattg 8830511  T

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Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 91 - 147
Target Start/End: Complemental strand, 8834277 - 8834221
Alignment:
Q  91 aggtgtagatcttgttcaccttgcatattacacaatcgctgtgcttaataacaattg 147  Q
    |||||||||||||||  |||||||| | |||||||| | |||||| |||||||||||    
T  8834277 aggtgtagatcttgtgaaccttgcacaatacacaattgatgtgctcaataacaattg 8834221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 18 - 114
Target Start/End: Original strand, 4538678 - 4538774
Alignment:
Q  18 atgtcatttgcaaagaagcctcaaatccttcatattgtataaatcttctcaactcaaagccaaaaggagcaaaaggtgtagatcttgttcaccttgc 114  Q
    |||||||||||||||||||||| ||||  |||||||||  ||||||||||||||||||||||  |||||||||||||| |||||||||  |||||||    
T  4538678 atgtcatttgcaaagaagcctccaatcaatcatattgttcaaatcttctcaactcaaagccaggaggagcaaaaggtgcagatcttgtcgaccttgc 4538774  T

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