View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7118_low_33 (Length: 225)
Name: NF7118_low_33
Description: NF7118
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7118_low_33 |
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Alignment Details
Target: chr1 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 653762 - 653975
Alignment:
| Q |
1 |
gccaaaggcttagtaagaagatcagcgagttggtcttttgttgacacatgtgagacttgaatcttgccatccagaacttgttcactaacaaaatgatagt |
100 |
Q |
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| T |
653762 |
gccaaaggcttagtaagaagatcagcgagttggtcttttgttgacacatgtgagacttgaatcttgccatccagaacttgttcactaacaaaatgatagt |
653861 |
T |
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| Q |
101 |
ccatagatatatgcttcattttggagtgaatgattcgatcggagcagagatatgttgcaccaacgttgtcacatagtagcaatggtggttttgacactgg |
200 |
Q |
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| T |
653862 |
ccatagatatatgcttcattttggagtgaatgattcgatcggagcagagatatgttgcaccaacgttgtcacatagtagcaatggtggttttgacactgg |
653961 |
T |
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| Q |
201 |
tagacgaagttcat |
214 |
Q |
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|||||||||||||| |
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| T |
653962 |
tagacgaagttcat |
653975 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 7 - 194
Target Start/End: Complemental strand, 3020002 - 3019815
Alignment:
| Q |
7 |
ggcttagtaagaagatcagcgagttggtcttttgttgacacatgtgagacttgaatcttgccatccagaacttgttcactaacaaaatgatagtccatag |
106 |
Q |
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| T |
3020002 |
ggcttggtgagaaggtcagcaagttgatccttggtagacacatgagagacttgtagctttccatcacgtacttgttcacgcacaaagtgatagtccaagg |
3019903 |
T |
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| Q |
107 |
atatatgcttcattttggagtgaatgattcgatcggagcagagatatgttgcaccaacgttgtcacatagtagcaatggtggttttga |
194 |
Q |
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| T |
3019902 |
atatgtgtttcattttggagtggagaactggattagagcatagatatgtggcacctacattatcacataagagcaatggtggctttga |
3019815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 7 - 194
Target Start/End: Complemental strand, 2662935 - 2662748
Alignment:
| Q |
7 |
ggcttagtaagaagatcagcgagttggtcttttgttgacacatgtgagacttgaatcttgccatccagaacttgttcactaacaaaatgatagtccatag |
106 |
Q |
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||||| || ||||| ||||| ||||| || || || |||||||| |||||||| | ||| ||||| | |||||||||| ||||| |||||||||| | |
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| T |
2662935 |
ggcttggtgagaaggtcagcaagttgatccttggtagacacatgagagacttgtagctttccatcacgtacttgttcacgcacaaagtgatagtccaagg |
2662836 |
T |
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| Q |
107 |
atatatgcttcattttggagtgaatgattcgatcggagcagagatatgttgcaccaacgttgtcacatagtagcaatggtggttttga |
194 |
Q |
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| T |
2662835 |
atatgtgtttcattttggagtggagaactggattagagcatagatatatggcacctacattatcacataagagcaatggtggctttga |
2662748 |
T |
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