View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7118_low_34 (Length: 221)
Name: NF7118_low_34
Description: NF7118
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7118_low_34 |
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Alignment Details
Target: chr1 (Bit Score: 191; Significance: 1e-104; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 207
Target Start/End: Complemental strand, 653738 - 653532
Alignment:
| Q |
1 |
ttactaagcctttggctcacacgcaatttagtaatcttcggtccaagatgcaagttactgatggcaacttcatcttgagggggtgtattggataatattg |
100 |
Q |
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| T |
653738 |
ttactaagcctttggctcacacgtaatttagtgatcttcggtccaagatgcaagttactgatggcaacttcatcttgagggggcgtattggataatattg |
653639 |
T |
|
| Q |
101 |
cctttgactcaacctcacgtgaatcaagcattcaacaacaatgattctattctcttcttatagttgacctataatcatttacattaatgtatttaatcat |
200 |
Q |
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| T |
653638 |
cctttgactcagcctcacgtgaatcaagcattcaacaacaatgattctattctcttcttatagttgacctataatcatttacattaatgtatttaatcat |
653539 |
T |
|
| Q |
201 |
gtatgtg |
207 |
Q |
| |
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||||||| |
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| T |
653538 |
gtatgtg |
653532 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 87 - 188
Target Start/End: Complemental strand, 656519 - 656418
Alignment:
| Q |
87 |
attggataatattgcctttgactcaacctcacgtgaatcaagcattcaacaacaatgattctattctcttcttatagttgacctataatcatttacatta |
186 |
Q |
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|||| |||||||| ||||||||| | |||||||||||||||||||||||| |||| |||| ||||||||||| |||||||||||| |||||||||||||| |
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| T |
656519 |
attgaataatatttcctttgactaatcctcacgtgaatcaagcattcaacgacaacgattttattctcttctcatagttgacctacaatcatttacatta |
656420 |
T |
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| Q |
187 |
at |
188 |
Q |
| |
|
|| |
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|
| T |
656419 |
at |
656418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 86 - 136
Target Start/End: Original strand, 656364 - 656414
Alignment:
| Q |
86 |
tattggataatattgcctttgactcaacctcacgtgaatcaagcattcaac |
136 |
Q |
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| T |
656364 |
tattggataatatttcccttgactcagcctcacgtggatcaagcattcaac |
656414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 47; Significance: 5e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 36 - 90
Target Start/End: Complemental strand, 40094313 - 40094259
Alignment:
| Q |
36 |
cttcggtccaagatgcaagttactgatggcaacttcatcttgagggggtgtattg |
90 |
Q |
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|
| T |
40094313 |
cttcggtccaagatgcaagttactgatggcaactacatcttgagggggcgtattg |
40094259 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 47; Significance: 5e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 36 - 90
Target Start/End: Original strand, 6407617 - 6407671
Alignment:
| Q |
36 |
cttcggtccaagatgcaagttactgatggcaacttcatcttgagggggtgtattg |
90 |
Q |
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| T |
6407617 |
cttcggtccaagatgcaagttactgatggcaactacatcttgagggggcgtattg |
6407671 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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