View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7118_low_4 (Length: 456)
Name: NF7118_low_4
Description: NF7118
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7118_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 361; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 19 - 450
Target Start/End: Complemental strand, 45855596 - 45855168
Alignment:
| Q |
19 |
gatgtgctctattgcaagaattaatctgttggttaatatttcacagtaatgtgtgtggcttcttattaatcacatgttggaccaataagaattaacttct |
118 |
Q |
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| T |
45855596 |
gatgtgctctattgcaagaattaatctgttggttaatatttcacagtaatgtgtgtggcttcttattaatcacatgttggaccaataagaattaacttct |
45855497 |
T |
|
| Q |
119 |
agcttattatattaggatgttatgttcacagctgtgattaaagttaattcccatcatgcaatataagttaaactttgcagcttataggtacttctagctt |
218 |
Q |
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| T |
45855496 |
agcttat---attaggatattatgttcacagctgtgattaaagttaattcacatcatgcaatataagttaaactttgcagcttataggtacttctagctt |
45855400 |
T |
|
| Q |
219 |
tgcaagattgaaggccgtgagatttttgaagccacgcagattatgcagacaataaaggatactgatttcaacaaattaatcannnnnnngtaaacaaaaa |
318 |
Q |
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||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| |||||||||||||||| ||||||||||| |
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| T |
45855399 |
tgcaagattgaaggccgtgagatttttgaagccacacacattatgcagacaataaaggatactgaattcaacaaattaatcatttatttgtaaacaaaaa |
45855300 |
T |
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| Q |
319 |
acaaattaaacgaaagcagtaaatgtcattttatttaatattgaattcttataagaaccgtcaattacacataatgtcactctttattactaatgatagt |
418 |
Q |
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| T |
45855299 |
acaaattaaacaaaagcagtaaatgtcattttatttaatattgagttcttataagaaccgtcagttacacataatgtcactctttattactattgatagt |
45855200 |
T |
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| Q |
419 |
tcaagtattgaacaccttattttaacacgaaa |
450 |
Q |
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| T |
45855199 |
tcaagtattgaacaccttattttaacacgaaa |
45855168 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 40 - 185
Target Start/End: Complemental strand, 45880618 - 45880476
Alignment:
| Q |
40 |
taatctgttggttaatatttcacagtaatgtgtgtggcttcttattaatcacatgttggaccaataagaattaacttctagcttattatattaggatgtt |
139 |
Q |
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|||| |||||||| ||||| |||| | || |||| |||||||||||||||||||||||||||||||| ||||||||| |||| ||||||||||||||| |
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| T |
45880618 |
taatttgttggttgatattccacaattatatgtgcggcttcttattaatcacatgttggaccaataaaaattaacttgtagc---ttatattaggatgtt |
45880522 |
T |
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| Q |
140 |
atgttcacagctgtgattaaagttaattcccatcatgcaatataag |
185 |
Q |
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| T |
45880521 |
ttgttcacaaccgagatttgatttagttcccagcatgcaaaataag |
45880476 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 348 - 404
Target Start/End: Complemental strand, 2665557 - 2665501
Alignment:
| Q |
348 |
tttatttaatattgaattcttataagaaccgtcaattacacataatgtcactcttta |
404 |
Q |
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| T |
2665557 |
tttatttatttttgaactcttacaataaccatcaattacacataatgtcactcttta |
2665501 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 348 - 402
Target Start/End: Original strand, 19261921 - 19261975
Alignment:
| Q |
348 |
tttatttaatattgaattcttataagaaccgtcaattacacataatgtcactctt |
402 |
Q |
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| T |
19261921 |
tttatttaatattgaactcattcacgaaccatcaattacacataatgtcactctt |
19261975 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 348 - 404
Target Start/End: Original strand, 16877031 - 16877087
Alignment:
| Q |
348 |
tttatttaatattgaattcttataagaaccgtcaattacacataatgtcactcttta |
404 |
Q |
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| T |
16877031 |
tttatttaatattaaaattttacaagaaccatcaattagacataatatcactcttta |
16877087 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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