View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7118_low_5 (Length: 433)

Name: NF7118_low_5
Description: NF7118
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7118_low_5
NF7118_low_5
[»] scaffold0003 (1 HSPs)
scaffold0003 (1-418)||(106888-107307)
[»] chr4 (3 HSPs)
chr4 (29-126)||(11029787-11029884)
chr4 (29-94)||(17512186-17512251)
chr4 (29-92)||(33370857-33370920)
[»] chr1 (2 HSPs)
chr1 (31-81)||(30780977-30781027)
chr1 (29-66)||(34716427-34716464)
[»] chr8 (4 HSPs)
chr8 (29-92)||(37562298-37562361)
chr8 (33-74)||(37563032-37563073)
chr8 (29-66)||(42346113-42346150)
chr8 (292-328)||(23388841-23388877)
[»] chr5 (4 HSPs)
chr5 (29-83)||(26711571-26711625)
chr5 (29-83)||(26981308-26981362)
chr5 (29-94)||(4555440-4555505)
chr5 (33-98)||(32943524-32943589)
[»] chr7 (1 HSPs)
chr7 (29-62)||(40320422-40320455)
[»] chr6 (1 HSPs)
chr6 (29-66)||(28975343-28975380)
[»] chr3 (1 HSPs)
chr3 (29-66)||(45297552-45297589)


Alignment Details
Target: scaffold0003 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 1 - 418
Target Start/End: Complemental strand, 107307 - 106888
Alignment:
Q  1 atatagtgaaagggataagatatcagtgggggtttagcatgggaaagcagagttgtttcccatcatacgaaagtaaatgttagtcattagattaggtaag 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||    
T  107307 atatagtgaaagggataagatatcagtgggggtttagcatgggaaagcagagttgtttcccatcatacgaaagtaaatgttagttattagattaagtaag 107208  T
Q  101 gaacatattcttattatacactctcatcactagannnnnnnggcactatcatctatcatcatctctccttcataccaatccacccaccaccagcatcaaa 200  Q
    |||||||||||||||||||||||||||||||||        || |||||||||||||||||| ||||||||||||||| ||||||||| || ||||||||    
T  107207 gaacatattcttattatacactctcatcactaggtttttttggtactatcatctatcatcatgtctccttcataccaacccacccacctccggcatcaaa 107108  T
Q  201 accatcctcacatatgtaatctttcttctttctaagcaaacccctatgtannnnnnncatctcaagtctgtttcatttaaaatctttttcataaagaagc 300  Q
    |||||| |||||| |||||| ||||||||||||||||||||||  |||||       ||||||||||||||||||||||||||||||||||||||||||     
T  107107 accatcatcacatctgtaatttttcttctttctaagcaaacccacatgtatttttttcatctcaagtctgtttcatttaaaatctttttcataaagaagt 107008  T
Q  301 tgtctttttcaattgaaactcattcattg-aacccatatcatgatttgtcct-nnnnnnncctaggttattaagatattaaattgacaaaagaatcttca 398  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||         ||||||||||||||||||||||||||||| |||||||||    
T  107007 tgtctttttcaattgaaactcattcattgaaacccatatcatgatttgtcctaaaaaaaatctaggttattaagatattaaattgacaaaggaatcttca 106908  T
Q  399 tgtgttcttcagaggaatct 418  Q
    ||||||||||| | ||||||    
T  106907 tgtgttcttcaaatgaatct 106888  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000003; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 29 - 126
Target Start/End: Complemental strand, 11029884 - 11029787
Alignment:
Q  29 ggggtttagcatgggaaagcagagttgtttcccatcatacgaaagtaaatgttagtcattagattaggtaaggaacatattcttattatacactctca 126  Q
    |||||||||||||  |||  ||||||||||  ||||| | |||||||||| |||| |||||||| | |||| ||||| | ||||||||||||||||||    
T  11029884 ggggtttagcatgaaaaatgagagttgtttttcatcacaggaaagtaaatattagacattagatcaagtaaagaacacaatcttattatacactctca 11029787  T

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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 29 - 94
Target Start/End: Complemental strand, 17512251 - 17512186
Alignment:
Q  29 ggggtttagcatgggaaagcagagttgtttcccatcatacgaaagtaaatgttagtcattagatta 94  Q
    ||||||||||||| ||| | | ||||||||||||||||  |||||||||| |||||||||||||||    
T  17512251 ggggtttagcatgagaatggatagttgtttcccatcatgggaaagtaaattttagtcattagatta 17512186  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 29 - 92
Target Start/End: Complemental strand, 33370920 - 33370857
Alignment:
Q  29 ggggtttagcatgggaaagcagagttgtttcccatcatacgaaagtaaatgttagtcattagat 92  Q
    ||||||||||||||||||| | | |||||||||| |||  |||||| |||||||| ||||||||    
T  33370920 ggggtttagcatgggaaaggatacttgtttcccaccatgggaaagttaatgttagccattagat 33370857  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 31 - 81
Target Start/End: Complemental strand, 30781027 - 30780977
Alignment:
Q  31 ggtttagcatgggaaagcagagttgtttcccatcatacgaaagtaaatgtt 81  Q
    |||||| |||||||||| ||||||||||||||||||  |||||||||||||    
T  30781027 ggtttaacatgggaaaggagagttgtttcccatcatgggaaagtaaatgtt 30780977  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 29 - 66
Target Start/End: Original strand, 34716427 - 34716464
Alignment:
Q  29 ggggtttagcatgggaaagcagagttgtttcccatcat 66  Q
    ||||||||||||||||| | ||||||||||||||||||    
T  34716427 ggggtttagcatgggaatggagagttgtttcccatcat 34716464  T

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Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 29 - 92
Target Start/End: Original strand, 37562298 - 37562361
Alignment:
Q  29 ggggtttagcatgggaaagcagagttgtttcccatcatacgaaagtaaatgttagtcattagat 92  Q
    ||||||||||||||||||| ||| |||||||||| |||| |||||| ||| |||  ||||||||    
T  37562298 ggggtttagcatgggaaaggagaattgtttcccaccataggaaagtcaattttaaccattagat 37562361  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 33 - 74
Target Start/End: Complemental strand, 37563073 - 37563032
Alignment:
Q  33 tttagcatgggaaagcagagttgtttcccatcatacgaaagt 74  Q
    ||||||||||||||| ||||||||||| ||||||| ||||||    
T  37563073 tttagcatgggaaagaagagttgtttctcatcataggaaagt 37563032  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 29 - 66
Target Start/End: Complemental strand, 42346150 - 42346113
Alignment:
Q  29 ggggtttagcatgggaaagcagagttgtttcccatcat 66  Q
    ||||||||||||||||| | ||||||||||||||||||    
T  42346150 ggggtttagcatgggaatggagagttgtttcccatcat 42346113  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 292 - 328
Target Start/End: Complemental strand, 23388877 - 23388841
Alignment:
Q  292 taaagaagctgtctttttcaattgaaactcattcatt 328  Q
    ||||||||||| |||||||||||||| ||||||||||    
T  23388877 taaagaagctgcctttttcaattgaatctcattcatt 23388841  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 29 - 83
Target Start/End: Original strand, 26711571 - 26711625
Alignment:
Q  29 ggggtttagcatgggaaagcagagttgtttcccatcatacgaaagtaaatgttag 83  Q
    ||||||||| ||||||||| | |||||||||||| |||| |||||||||| ||||    
T  26711571 ggggtttagtatgggaaaggaaagttgtttcccaacataggaaagtaaattttag 26711625  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 29 - 83
Target Start/End: Original strand, 26981308 - 26981362
Alignment:
Q  29 ggggtttagcatgggaaagcagagttgtttcccatcatacgaaagtaaatgttag 83  Q
    ||||||||| ||||||||| | |||||||||||| |||| |||||||||| ||||    
T  26981308 ggggtttagtatgggaaaggaaagttgtttcccaacataggaaagtaaattttag 26981362  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 29 - 94
Target Start/End: Complemental strand, 4555505 - 4555440
Alignment:
Q  29 ggggtttagcatgggaaagcagagttgtttcccatcatacgaaagtaaatgttagtcattagatta 94  Q
    ||||||||||||||||||    |||| |||||||||||  |||||| |||||||| ||||||||||    
T  4555505 ggggtttagcatgggaaatggaagttctttcccatcatgtgaaagttaatgttagccattagatta 4555440  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 33 - 98
Target Start/End: Original strand, 32943524 - 32943589
Alignment:
Q  33 tttagcatgggaaagcagagttgtttcccatcatacgaaagtaaatgttagtcattagattaggta 98  Q
    ||||||||||||||| | | |||||||||| |||  |||||| |||||||| |||||||| |||||    
T  32943524 tttagcatgggaaaggatatttgtttcccaccatgggaaagttaatgttagccattagatcaggta 32943589  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 29 - 62
Target Start/End: Complemental strand, 40320455 - 40320422
Alignment:
Q  29 ggggtttagcatgggaaagcagagttgtttccca 62  Q
    ||||||||||||||||||| ||||||||||||||    
T  40320455 ggggtttagcatgggaaaggagagttgtttccca 40320422  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 29 - 66
Target Start/End: Original strand, 28975343 - 28975380
Alignment:
Q  29 ggggtttagcatgggaaagcagagttgtttcccatcat 66  Q
    ||||||||||||||||||| |||||||||||| |||||    
T  28975343 ggggtttagcatgggaaaggagagttgtttcctatcat 28975380  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 29 - 66
Target Start/End: Original strand, 45297552 - 45297589
Alignment:
Q  29 ggggtttagcatgggaaagcagagttgtttcccatcat 66  Q
    ||||||||| ||||||||| ||||||||||||||||||    
T  45297552 ggggtttagtatgggaaaggagagttgtttcccatcat 45297589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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