View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7119_low_1 (Length: 354)
Name: NF7119_low_1
Description: NF7119
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7119_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 121; Significance: 6e-62; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 54 - 182
Target Start/End: Original strand, 38031886 - 38032013
Alignment:
| Q |
54 |
caacgttaaaagttgttagttggaagttgtaaacagtggttttgcaacgtctctgaaattacccatgagtgctgtttccaagaaatggttggagataaca |
153 |
Q |
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| T |
38031886 |
caacgttaaaagttgttagttggaagttgtaaacagtggttttgcaacgtctctgaaattacccatgagtgctgttt-caagaaatggttggagataaca |
38031984 |
T |
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| Q |
154 |
tgaaaacccggggttagaaatgtaaggtg |
182 |
Q |
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| T |
38031985 |
tgaaaacccggggttagaaatgtaaggtg |
38032013 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 221 - 339
Target Start/End: Original strand, 38032043 - 38032161
Alignment:
| Q |
221 |
ttagagtattagatgtaaaagttagttatactggtacttaattacgttgttattcttttttggtattatggatcttatgtatcccttcatataatttatt |
320 |
Q |
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| T |
38032043 |
ttagagtattagatgtaaaagttagttatactggtacttaattatgttgttattcttttttggtattatagatcttatgtatcccttcatataatttatt |
38032142 |
T |
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| Q |
321 |
ctctcattagcaataatat |
339 |
Q |
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| T |
38032143 |
ctctcattagcaataatat |
38032161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 58 - 114
Target Start/End: Original strand, 38030922 - 38030978
Alignment:
| Q |
58 |
gttaaaagttgttagttggaagttgtaaacagtggttttgcaacgtctctgaaatta |
114 |
Q |
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| T |
38030922 |
gttaaaagttgttggttggaagttgtaaatagtggtttggagacgtctctaaaatta |
38030978 |
T |
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