View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7119_low_2 (Length: 352)
Name: NF7119_low_2
Description: NF7119
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7119_low_2 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 317; Significance: 1e-179; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 1 - 352
Target Start/End: Original strand, 33632360 - 33632712
Alignment:
| Q |
1 |
ttggcattatgtgcttaaaatatgccttgttagtgtaaatataatataacattaaaaacaaggccaagaaaagagaagatacaattaagatatgataatg |
100 |
Q |
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| T |
33632360 |
ttggcattatgtgcttaagatataccttgttagtttaaatataatataacattaaaaacaaggccaagaaaagagaagatacaattaagatatgataatg |
33632459 |
T |
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| Q |
101 |
caattgagtttagcagagaagccttgttattttttgtacgcataacacaagatgcttcctcctttgcatttacatgacagtgatacaaagtagaatgaaa |
200 |
Q |
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| T |
33632460 |
caattgagtttagcagagaagtcttgttattttttgtacgcataacacaagatgcttcctcctttgcatttacatgacagtgatacaaagtagaatgaaa |
33632559 |
T |
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| Q |
201 |
gcaaatgataatcataattcatggtggtatggtattgacccacgaac-aattattgcataaccatacattattgattaacatcacattgagtttgttttg |
299 |
Q |
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| T |
33632560 |
gcaaatgataatcataattcatggtggtatggtattgacccacgaacaaattattgcataatcatactttattgattaacatcacattgagtttgttttg |
33632659 |
T |
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| Q |
300 |
gaaaagagtagtaaatcgatgtgttaatgggaaacatgagatgtcttcttctt |
352 |
Q |
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| T |
33632660 |
gaaaagagtagtaaatcaatgtgttaatgggaaacatgagatgtcttcttctt |
33632712 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 112
Target Start/End: Original strand, 8156698 - 8156816
Alignment:
| Q |
1 |
ttggcattatgtgcttaaaatatgccttgttagtgtaaatataa-tataa---cattaaaaacaaggccaagaaaagagaagatacaat---taagatat |
93 |
Q |
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| T |
8156698 |
ttggcattatgtgcttaagatattcctagtcagtgtagatataactataatagcattaaaaacaaggccgggaaaagagaagatacaatgattaagatat |
8156797 |
T |
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| Q |
94 |
gataatgcaattgagttta |
112 |
Q |
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| T |
8156798 |
gataatgcaattgagttta |
8156816 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 141 - 339
Target Start/End: Original strand, 50980218 - 50980404
Alignment:
| Q |
141 |
cataacacaagatgcttcctcctttgcatttacatgacagtgatacaaagtagaatgaaagcaaatgataatcataattcatggtggtatggtattgacc |
240 |
Q |
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| T |
50980218 |
cataaaacaagatgcttgctcctttacatctatttaacagtcatacaaagtagaacgaaaggtaatgataatcataatt-------------gattgacc |
50980304 |
T |
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| Q |
241 |
cacgaacaattattgcataaccat-acattattgattaacatcacattgagtttgttttggaaaagagtagtaaatcgatgtgttaatgggaaacatgag |
339 |
Q |
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| T |
50980305 |
tacaagcaattattacataatcatgactttattgattaacatcacattgagtattcttgtgaaaagagcagtaaatcaatgtatcaatggaaaacatgag |
50980404 |
T |
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