View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7120_high_13 (Length: 242)
Name: NF7120_high_13
Description: NF7120
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7120_high_13 |
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Alignment Details
Target: chr5 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 4174641 - 4174416
Alignment:
| Q |
1 |
ttgagttcaatggtaggtcctaaaacaaccgagccatcggtgctaaagaagcaagctaaggatctagtagaaaactggcctccagagctactaaacataa |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||| |
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| T |
4174641 |
ttgagttcaatggtaggtcctaaaacaaccgagccatcggtgctaaagaagcaagctaaggatcttgtagaaaactggcttccagagctactaaacataa |
4174542 |
T |
|
| Q |
101 |
tggattctacgccggatgagactatagtcttgactccgttgatggatcgatggctttggccatggataagtccacctgtttctagaggtagagttgtact |
200 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4174541 |
tggattctacgccggatgacactatagtcttgactccgttgatggatcgatggctttggccatggataagtccacctgtttctagaggtagagttgtact |
4174442 |
T |
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| Q |
201 |
cgttggagacgcttggcacccaatga |
226 |
Q |
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|||||||||||||||||||||||||| |
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| T |
4174441 |
cgttggagacgcttggcacccaatga |
4174416 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 4170643 - 4170418
Alignment:
| Q |
1 |
ttgagttcaatggtaggtcctaaaacaaccgagccatcggtgctaaagaagcaagctaaggatctagtagaaaactggcctccagagctactaaacataa |
100 |
Q |
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||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
4170643 |
ttgagttcaatggcaggtcctaaaacaactgagccatcggtgctaaagaagcaagctaaggatctagtggaaaactggcctccagagctactaaacataa |
4170544 |
T |
|
| Q |
101 |
tggattctacgccggatgagactatagtcttgactccgttgatggatcgatggctttggccatggataagtccacctgtttctagaggtagagttgtact |
200 |
Q |
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|||||||||| |||||||| |||||| || |||||||||| ||||||||||||||||||||| | |||||||||||||||| ||||||||||||||| |
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| T |
4170543 |
tggattctacaccggatgacactataatcaggactccgttggtggatcgatggctttggccatcaacaagtccacctgtttctgcaggtagagttgtact |
4170444 |
T |
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| Q |
201 |
cgttggagacgcttggcacccaatga |
226 |
Q |
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|||||| || |||||||||||||||| |
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| T |
4170443 |
cgttggtgatgcttggcacccaatga |
4170418 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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