View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7120_high_6 (Length: 296)
Name: NF7120_high_6
Description: NF7120
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7120_high_6 |
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Alignment Details
Target: chr7 (Bit Score: 103; Significance: 3e-51; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 172 - 278
Target Start/End: Original strand, 27324298 - 27324404
Alignment:
| Q |
172 |
cttatatgctttggtgtttgcatttgagagggtttcacactgatagtttccaattgcatcctccatgatggttcatattgttggttggtggaaatcatca |
271 |
Q |
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| T |
27324298 |
cttatatgctttggtgtttgcatttgagagggtttcacactgatagttcccaattgcatcctccatgatggttcatattgttggttggtggaaatcatca |
27324397 |
T |
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| Q |
272 |
tccatgg |
278 |
Q |
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||||||| |
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| T |
27324398 |
tccatgg |
27324404 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 49 - 127
Target Start/End: Original strand, 27324176 - 27324254
Alignment:
| Q |
49 |
gggaatagtgtttttcaattgcaaataagagagatttaattagacgaagcatgctttggtgcttgctttgattgatttt |
127 |
Q |
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| T |
27324176 |
gggaatagtgtttttcaattgcaaataagagagatttaattagacgaagcatgctttggtgcttgctttgattgatttt |
27324254 |
T |
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Target: chr4 (Bit Score: 103; Significance: 3e-51; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 172 - 278
Target Start/End: Original strand, 28359093 - 28359199
Alignment:
| Q |
172 |
cttatatgctttggtgtttgcatttgagagggtttcacactgatagtttccaattgcatcctccatgatggttcatattgttggttggtggaaatcatca |
271 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28359093 |
cttatatgctttggtgtttgcatttgagagggtttcacactgatagttcccaattgcatcctccatgatggttcatattgttggttggtggaaatcatca |
28359192 |
T |
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| Q |
272 |
tccatgg |
278 |
Q |
| |
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||||||| |
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| T |
28359193 |
tccatgg |
28359199 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 49 - 127
Target Start/End: Original strand, 28358971 - 28359049
Alignment:
| Q |
49 |
gggaatagtgtttttcaattgcaaataagagagatttaattagacgaagcatgctttggtgcttgctttgattgatttt |
127 |
Q |
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| T |
28358971 |
gggaatagtgtttttcaattgcaaataagagagatttaattagacgaagcatgctttggtgcttgctttgattgatttt |
28359049 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 92; Significance: 1e-44; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 172 - 279
Target Start/End: Original strand, 3500529 - 3500636
Alignment:
| Q |
172 |
cttatatgctttggtgtttgcatttgagagggtttcacactgatagtttccaattgcatcctccatgatggttcatattgttggttggtggaaatcatca |
271 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
3500529 |
cttatatgctttggtgtttgcatttgagaaggtttcacactgatagttcgcaattgcatcctccatgatagttcatattgttggttggtggaaatcatca |
3500628 |
T |
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| Q |
272 |
tccatggt |
279 |
Q |
| |
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|||||||| |
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| T |
3500629 |
tccatggt |
3500636 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 49 - 127
Target Start/End: Original strand, 3500408 - 3500486
Alignment:
| Q |
49 |
gggaatagtgtttttcaattgcaaataagagagatttaattagacgaagcatgctttggtgcttgctttgattgatttt |
127 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
3500408 |
gggaatagtgtttttcaattgcaaataagagagatttaattagacgaagcatgttttggtgcttgctttgattgatttt |
3500486 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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