View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7120_low_1 (Length: 619)
Name: NF7120_low_1
Description: NF7120
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7120_low_1 |
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Alignment Details
Target: chr6 (Bit Score: 452; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 452; E-Value: 0
Query Start/End: Original strand, 114 - 605
Target Start/End: Complemental strand, 983266 - 982775
Alignment:
| Q |
114 |
tggtagcaacataggaaatttgaatgcatgaccaagacacaagatgctttaaaaagaaagacccttaaaatatcttctaccatttacatcatcaactgtt |
213 |
Q |
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| T |
983266 |
tggtagcaacataggaaatttgaatgcatgaccaagacacaagatactttaaaaagaaagacccttaaaatatcttctaccatttacatcatcaactgtt |
983167 |
T |
|
| Q |
214 |
tgccacataaaatacctatatactttattttgtagcaaatgtttaaattgtactatattttttcttgtacaaacttgtactatataattaatttaccata |
313 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
983166 |
tgccacataaaatacctatatactttattttgtagcaaatgtttaaactgtactatattttttcttgtacaaacttgtactatattattaatttaccata |
983067 |
T |
|
| Q |
314 |
gcagttcagttcacgcacgcataaactcattaatttaccataccaattcagttcacacatgtataaactcattaatgtacaatatagaacaatctcaatc |
413 |
Q |
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| T |
983066 |
gcagttcagttcatgcacgcataaactcattaatttaccataccaattcagttcacacatgtataaactcattaatgtacaatatagaacaatctcaatc |
982967 |
T |
|
| Q |
414 |
agtgaacacaacatacaacattataacataatcacatggaggtcggttgagagacttgttgcatcgaacgatttttgaaagcttgactgagttaactctg |
513 |
Q |
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| T |
982966 |
agtgaacacaacatacaacattataacataatcacgtggaggtcggttgagagacttgttgcatcgaatgatttctgaaagcctgactgagttaactctg |
982867 |
T |
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| Q |
514 |
ggttgaagaattgtttgagagttgaagggtgaatcagtagacttgatctttttcttttaattatggtttgatttgattgataagagaataat |
605 |
Q |
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| T |
982866 |
ggttgaagaattgtttgagagttgaagggtgaatcaatagacatgatctttttcttttaattatggtttgatttgattgataagagaataat |
982775 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 81; Significance: 8e-38; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 116 - 228
Target Start/End: Complemental strand, 40413336 - 40413224
Alignment:
| Q |
116 |
gtagcaacataggaaatttgaatgcatgaccaagacacaagatgctttaaaaagaaagacccttaaaatatcttctaccatttacatcatcaactgtttg |
215 |
Q |
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|||||| || ||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| |
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| T |
40413336 |
gtagcagcaaaggaaatttgaatgcatgaccaagacacaagatgctttaaaaagaaataccctcgaaatatcttctaccatttacatcatcaactgtttg |
40413237 |
T |
|
| Q |
216 |
ccacataaaatac |
228 |
Q |
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|| ||| ||||| |
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| T |
40413236 |
acatatacaatac |
40413224 |
T |
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