View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7120_low_10 (Length: 276)
Name: NF7120_low_10
Description: NF7120
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7120_low_10 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 257
Target Start/End: Original strand, 9946185 - 9946444
Alignment:
| Q |
1 |
tcatattgatgaagtaattaaaaagaatgcagaagttggtcatgctttacatgctgaagcatcaaaagttgaaccaaatcaagacaatgtttctagtagc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9946185 |
tcatattgatgaagtaattaaaaagaatgcagaagttggtcatgctttacatgctgaagcatcaaaagttgaaccaaatcaagacaatgtttctagtagc |
9946284 |
T |
|
| Q |
101 |
aatgaagtggcaactactacttctcctggtcatgaac---atagtcatcatattcagccacaaattgagaacaagccttgatgttggcaagtattgtgtg |
197 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||| |||| ||||||| |
|
|
| T |
9946285 |
aatgaagtggcaactactacttctcctggtcatgaacatgatcatcatcatattcagccacaaattgagaacaagccttgatgttgggaagtgttgtgtg |
9946384 |
T |
|
| Q |
198 |
tatattcccacagagatattatacatcctcgtacatggattccaaacgaaggatcctatt |
257 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||| |||| |||||||||||| |
|
|
| T |
9946385 |
tatattcccacagagatattatatatcctcgtacatggattcaaaacaaaggatcctatt |
9946444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University