View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7120_low_12 (Length: 249)
Name: NF7120_low_12
Description: NF7120
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7120_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 161; Significance: 6e-86; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 4174984 - 4175203
Alignment:
| Q |
1 |
ttcatgattggccattatgtttgtaagatccttttctgcactatgtttttagagtcataaccaatcatgtatgtgcttagctttatatannnnnnnn-at |
99 |
Q |
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| T |
4174984 |
ttcatgattggccattatgtttgtaagatccttttctgcactatgtttttagagtcataaccaatcatatatgtgcttagcttcatatatatatttttat |
4175083 |
T |
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| Q |
100 |
tagaatcgtgtttaaacacatttgacaaaagccaaatgctttttcaactaagttcggtaaaaataataaaatcacggttgaatgagtaaatttcaacacc |
199 |
Q |
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| T |
4175084 |
tagaatcgtgtttaaacacatttgacacaagccaaatgttttttcaactaagttcggtaaa---aataaaatcacggttgaatgagtaaatttcaacacc |
4175180 |
T |
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| Q |
200 |
aaacacaccataaatcacaatga |
222 |
Q |
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| T |
4175181 |
aaacacaccataaatcacaatga |
4175203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 101 - 235
Target Start/End: Original strand, 4171098 - 4171234
Alignment:
| Q |
101 |
agaatcgtgtttaaacacatttg--acaaaagccaaatgctttttcaactaagttcggtaaaaataataaaatcacggttgaatgagtaaatttcaacac |
198 |
Q |
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|||||| |||||||||||| ||| ||| || ||||||| ||| |||||| |||| | || | ||||||||||| |||||||| ||||| ||||||||| |
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| T |
4171098 |
agaatcatgtttaaacacagttggaacagaaaccaaatgttttgtcaactgagtttgtaaatactaataaaatcatggttgaataagtaactttcaacac |
4171197 |
T |
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| Q |
199 |
caaacacaccataaatcacaatgactaacctttgcaa |
235 |
Q |
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| T |
4171198 |
caaacacaccataaattacaatgactaacctttgcaa |
4171234 |
T |
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