View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7120_low_13 (Length: 247)
Name: NF7120_low_13
Description: NF7120
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7120_low_13 |
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Alignment Details
Target: chr8 (Bit Score: 187; Significance: 1e-101; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 28 - 230
Target Start/End: Original strand, 36008322 - 36008524
Alignment:
| Q |
28 |
tggttatacttgaaagatacaaaaattaacaagagaaaaattacatatgaatgttctgaaaccacattcatatgaacgtggtttttgaacaccttgaaga |
127 |
Q |
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| T |
36008322 |
tggttatactcgaaagatacaaaaattaacaagagaaaaattacatatgaatgtttcgaaaccacattcatatgaacgtggtttctgaacaccttgaaga |
36008421 |
T |
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| Q |
128 |
aaacagagttgcaaggaatgtgaattgaattgaagtagagttgcaggagaatcgctgggcaaatctcctttggcagattgcacactaagaaatgattgca |
227 |
Q |
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| T |
36008422 |
aaacagagttgcaaggaatgtgaattgaattgaagtagagttgcaggagaatcgctgggcaaatctcctttggcagattgcacactaagaaatgattgca |
36008521 |
T |
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| Q |
228 |
atg |
230 |
Q |
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||| |
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| T |
36008522 |
atg |
36008524 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 128 - 230
Target Start/End: Original strand, 36019758 - 36019860
Alignment:
| Q |
128 |
aaacagagttgcaaggaatgtgaattgaattgaagtagagttgcaggagaatcgctgggcaaatctcctttggcagattgcacactaagaaatgattgca |
227 |
Q |
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| T |
36019758 |
aaaccgagttgtaaagaatgtggtttcaattgaagtagagttgcatgagaatcgctgggcaaatctcctttggcagattacacactaagtgatgattgca |
36019857 |
T |
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| Q |
228 |
atg |
230 |
Q |
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||| |
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| T |
36019858 |
atg |
36019860 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 168 - 230
Target Start/End: Original strand, 36011171 - 36011234
Alignment:
| Q |
168 |
ttgcaggagaatcgctgggcaaatctcctttggcagattgcacactaagaaatg-attgcaatg |
230 |
Q |
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| T |
36011171 |
ttgcaggagaatcgctgggcaaatctcctttggcagattgcacactaagagatgaattgcaatg |
36011234 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 155 - 230
Target Start/End: Original strand, 36014900 - 36014976
Alignment:
| Q |
155 |
aattgaagtagagttgcaggagaatcgctgggcaaatctcctttggcagattgcacactaagaaatg-attgcaatg |
230 |
Q |
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| T |
36014900 |
aattgaagcagatttacaggagaatcgctgggcaaatcttctttggcagattgcacactaagagatgaattgcaatg |
36014976 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 213
Target Start/End: Original strand, 36003482 - 36003522
Alignment:
| Q |
173 |
ggagaatcgctgggcaaatctcctttggcagattgcacact |
213 |
Q |
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| T |
36003482 |
ggagaattgctgggcaaatctcctttggcaggttacacact |
36003522 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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