View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7120_low_15 (Length: 238)
Name: NF7120_low_15
Description: NF7120
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7120_low_15 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 17 - 238
Target Start/End: Original strand, 10295840 - 10296061
Alignment:
| Q |
17 |
ggatgttgcttgtaatgaggactgaactgaatcatggtacatattcgtctgacatatgttgtgtggatccactaagtgggtcagtactggcgtcttttga |
116 |
Q |
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| T |
10295840 |
ggatgttgcttgtaatgaggactgaactgaatcatggtacatattcgtctgacatatgttgtgtggatccactaagtgggtcagtactggcgtcttttga |
10295939 |
T |
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| Q |
117 |
acttgaacatggagaagtaaaatcaatggaactagtcaagtttggaagtaagctggtgattgtggttggaactagtctttcttcgaagtcagcatcatta |
216 |
Q |
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| T |
10295940 |
acttgaacatggagaagtaaaatcaatggaactagtcaagtttggaagtaagctggtgattgtggttggaactagtctttcttcgaagtcagcatcatta |
10296039 |
T |
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| Q |
217 |
tctcaaaaaacttcacctttcc |
238 |
Q |
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| T |
10296040 |
tctcaaaaaacttcacctttcc |
10296061 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 18 - 194
Target Start/End: Complemental strand, 43797190 - 43797011
Alignment:
| Q |
18 |
gatgttgcttgtaatgaggactgaactgaatcatggtacatattcgtctgacatatgttgtgtggatccactaagtgggtcagtactggcgtcttttgaa |
117 |
Q |
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|||||| ||||| |||||||| ||||||| | |||||||| || |||||||||||||||||||||||| ||||| ||||||||||| |||||||| | |
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| T |
43797190 |
gatgttacttgtgatgaggaccgaactgagtattggtacatgtttgtctgacatatgttgtgtggatcccctaagcgggtcagtactatcgtcttttaga |
43797091 |
T |
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| Q |
118 |
cttgaacatggaga---agtaaaatcaatggaactagtcaagtttggaagtaagctggtgattgtggttggaactagtct |
194 |
Q |
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| T |
43797090 |
ctagaacttggagaaacagcaacatccatggaattaattagggttggaagtgagcaggtgcttgtggttggaactagtct |
43797011 |
T |
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