View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7120_low_2 (Length: 417)
Name: NF7120_low_2
Description: NF7120
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7120_low_2 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 386; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 1 - 407
Target Start/End: Original strand, 10296134 - 10296542
Alignment:
| Q |
1 |
tggatggcatcaaacttggtaataaaaatgaaacgtggcagttctgagtggtttgtgcaactatatggaatggaattccacttgctatctgtccttatct |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10296134 |
tggatggcatcaaacttggtaataaaaatgaaacgtggcagttctgagtggtttgtgcaactatatggaatggaattccacttgctatctgtccttatct |
10296233 |
T |
|
| Q |
101 |
tgatcactacttcttagcatcttcaggaaatactgtaagttggataaaccttgtatgtttacctcttcgcataagaaaactacatttggttactgttttc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10296234 |
tgatcactacttcttagcatcttcaggaaatactgtaagttggataaaccttgtatgtttacctcttcgcataagaaaactacatttggttactgttttc |
10296333 |
T |
|
| Q |
201 |
tcatttaattattttctggttattcagttctatgtctgtgctttaga--atgacactactttgattgggagagttaaagtgataaagtatgctactgaaa |
298 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10296334 |
tcatttaattattttcttgttattcagttctatgtctgtgctttagaatatgacactactttgattgggagagttaaagtgataaagtatgctactgaaa |
10296433 |
T |
|
| Q |
299 |
ggacacgtttcatcataaaatctttgacagcacattgttctagaattgcagttggtgatggtcgtgatggtatcattttcttttcatacgacgaggtgag |
398 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
10296434 |
ggacacgtttcatcataaaatctttgacagcacattgttctagaattgcagttggtgatggtcgtgatggtatcattttcttttcttacgacgaggtgag |
10296533 |
T |
|
| Q |
399 |
tggtgatgt |
407 |
Q |
| |
|
|| |||||| |
|
|
| T |
10296534 |
tgttgatgt |
10296542 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 313 - 406
Target Start/End: Complemental strand, 43795367 - 43795274
Alignment:
| Q |
313 |
ataaaatctttgacagcacattgttctagaattgcagttggtgatggtcgtgatggtatcattttcttttcatacgacgaggtgagtggtgatg |
406 |
Q |
| |
|
|||| ||||||||| ||| ||| | ||||||||||||||| ||| ||||||||||||| |||||||||| ||| | |||||||||||||||| |
|
|
| T |
43795367 |
ataagatctttgactgcatattttagtagaattgcagttggagataatcgtgatggtatccttttcttttcttaccatgaggtgagtggtgatg |
43795274 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 122
Target Start/End: Complemental strand, 43795711 - 43795595
Alignment:
| Q |
3 |
gatggcatcaaacttggtaataaaaatgaaacgtggcagttctgagtggtttgtgcaactatatggaatggaattccacttgctatctgtccttatcttg |
102 |
Q |
| |
|
|||||||||||||||| || ||||||||| ||||||||| || ||| || |||||||| |||| | |||||| || || |||||||||||||||| |
|
|
| T |
43795711 |
gatggcatcaaacttg---atgaaaatgaaatttggcagttccgattggcttctgcaactacatggcagggaattgtacaagcgatctgtccttatcttg |
43795615 |
T |
|
| Q |
103 |
atcactacttcttagcatct |
122 |
Q |
| |
|
||| ||| || || |||||| |
|
|
| T |
43795614 |
atcgctattttttggcatct |
43795595 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University