View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7120_low_5 (Length: 326)
Name: NF7120_low_5
Description: NF7120
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7120_low_5 |
 | |
|
| [»] chr5 (4 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 291; Significance: 1e-163; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 20 - 326
Target Start/End: Original strand, 6785923 - 6786229
Alignment:
| Q |
20 |
attgccactgtcttgcgacacaaaattattacctgaagtatgagagggagttgtgaaaggttttgtttctgctgttgcttccgtagacattggaagtatt |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6785923 |
attgccactgtcttgcgacacaaaattattacctgaagtatgagagggagttgtgaaaggttttgtttctgctgttgcttccgtagacattggaagtatt |
6786022 |
T |
|
| Q |
120 |
gtgattgattaatgatattgttctaaggtaggagtagaacactacatattatatgggagtaagagcatcgcatggtttggtttttgcattaaaatgtgtt |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
6786023 |
gtgattgattaatgatattgttctaaggtaggagtagaacactatatattatatgggagtaagagcatcgcatggtttggtttttgctttaaaatgtgtt |
6786122 |
T |
|
| Q |
220 |
gtagcaaaatactaatcttacggtgtacgtaattcaaaacagggtagtactctgtctttgagttacacgtgtccaactttgaggagacgtggaagatttg |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
6786123 |
gtagcaaaatactaatcttacggtgtacgtaattcaaaacagggtaatactctgtctttgagttacacgtgtacaactttgaggagacgtggaagatttg |
6786222 |
T |
|
| Q |
320 |
cagcctc |
326 |
Q |
| |
|
||||||| |
|
|
| T |
6786223 |
cagcctc |
6786229 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 20 - 90
Target Start/End: Original strand, 6760888 - 6760958
Alignment:
| Q |
20 |
attgccactgtcttgcgacacaaaattattacctgaagtatgagagggagttgtgaaaggttttgtttctg |
90 |
Q |
| |
|
|||||||| ||||||| |||||||||||||| ||||| |||||||||||||| ||||||||||||||||| |
|
|
| T |
6760888 |
attgccaccatcttgcgccacaaaattattacatgaagaatgagagggagttgagaaaggttttgtttctg |
6760958 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 192 - 280
Target Start/End: Original strand, 6761205 - 6761293
Alignment:
| Q |
192 |
tggtttggtttttgcattaaaatgtgttgtagcaaaatactaatcttacggtgtacgtaattcaaaacagggtagtactctgtctttga |
280 |
Q |
| |
|
|||||| |||||||| |||||||||||||||||||||||| ||||| ||| |||||||||||||||||||| ||||| || ||||| |
|
|
| T |
6761205 |
tggtttagtttttgctttaaaatgtgttgtagcaaaatacggttcttatggtacacgtaattcaaaacagggtaatactcggtgtttga |
6761293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 32 - 90
Target Start/End: Original strand, 6731250 - 6731308
Alignment:
| Q |
32 |
ttgcgacacaaaattattacctgaagtatgagagggagttgtgaaaggttttgtttctg |
90 |
Q |
| |
|
||||| |||||||| |||||| || | |||||||||||||| ||||||||||||||||| |
|
|
| T |
6731250 |
ttgcgccacaaaataattacccgatgaatgagagggagttgagaaaggttttgtttctg |
6731308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University