View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7120_low_6 (Length: 315)
Name: NF7120_low_6
Description: NF7120
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7120_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 191; Significance: 1e-104; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 10 - 220
Target Start/End: Complemental strand, 35263751 - 35263541
Alignment:
| Q |
10 |
agaacctgtggcacgtagcaatgtcaatgtccttttaggcttttagtatgggaggagatgaatgttggatttcctaaaaatgcatatataacttattcac |
109 |
Q |
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| T |
35263751 |
agaacttgaggcacgtagcaatgtcaatgtccttttaggcttttagtatgggaggagatgaatgttggatttcctaaaacggcatatataacttattcac |
35263652 |
T |
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| Q |
110 |
tgagaagtctgtcatttagtttcagcttgaaatacttaagttgtactttgtaacagcctccaatttttagttaacgtcctgcattgttaatttatcgacc |
209 |
Q |
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| T |
35263651 |
tgagaagtctgtcatttagtttcagcttgaaatacttaagttgtgctttgtaacagcctccaatttttagttaacgtcctgcattgttaatttatcgacc |
35263552 |
T |
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| Q |
210 |
ttatatatata |
220 |
Q |
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||||||||||| |
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| T |
35263551 |
ttatatatata |
35263541 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 49 - 205
Target Start/End: Complemental strand, 35271129 - 35270972
Alignment:
| Q |
49 |
cttttagtatgggaggagatgaatgttggatttcctaaaaatgcatatataacttattcactgagaagtctgtcatttagtttcagcttgaaatacttaa |
148 |
Q |
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| T |
35271129 |
ctttaagtatgggagaagatgaatgttggatttcctgaaacggcatatataacttattcactgagaagtctgtcatttagtttcagtttgaaatacttga |
35271030 |
T |
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| Q |
149 |
gttgtactttgtaacagcctccaatttttagttaacg-tcctgcattgttaatttatc |
205 |
Q |
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| T |
35271029 |
gttatgcttggtaacgatctccaatttttagttaacgatcctgcactgttaatttatc |
35270972 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 49 - 205
Target Start/End: Complemental strand, 35252776 - 35252616
Alignment:
| Q |
49 |
cttttagtatgggaggagatgaatgttggatttcctaaaaatgcatatataacttattcactgagaagtctgtcat--ttagtttcagcttgaaatactt |
146 |
Q |
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| T |
35252776 |
ctttaagtaagggagaagattaatgctagatttcctataatagcatatataacttactaattgagatgtctgtcataatcagtttcgacttgaaatactt |
35252677 |
T |
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| Q |
147 |
aagttgtactttgt-aacagcctccaatttttagttaacg-tcctgcattgttaatttatc |
205 |
Q |
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| T |
35252676 |
cagttattctttgttaacagcctccaatttttagttaacgaacctgtactgttaatttatc |
35252616 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 217 - 296
Target Start/End: Complemental strand, 22801608 - 22801529
Alignment:
| Q |
217 |
tataacacacccatccatttttatgcaggtgtgcattaacatgtaacacctttttaattggacattagaaacccttttct |
296 |
Q |
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| T |
22801608 |
tataacacacccatccatttttaggaaggtgtgcagtagcatgtaacacctttttaattggacattaaaaacccttttct |
22801529 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000007; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 232 - 280
Target Start/End: Original strand, 50953733 - 50953781
Alignment:
| Q |
232 |
catttttatgcaggtgtgcattaacatgtaacacctttttaattggaca |
280 |
Q |
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| T |
50953733 |
catttttatgaaggtgtgcattagcatgaaacacctttttaattggaca |
50953781 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 218 - 296
Target Start/End: Complemental strand, 4355879 - 4355801
Alignment:
| Q |
218 |
ataacacacccatccatttttatgcaggtgtgcattaacatgtaacacctttttaattggacattagaaacccttttct |
296 |
Q |
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| T |
4355879 |
ataatacacctatctatttttatgaaggtgtatattagcatgcaacaccttattatttggacactaaaaacccttttct |
4355801 |
T |
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