View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7121_high_4 (Length: 391)
Name: NF7121_high_4
Description: NF7121
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7121_high_4 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 276; Significance: 1e-154; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 17 - 368
Target Start/End: Complemental strand, 36124055 - 36123701
Alignment:
| Q |
17 |
aaaatacaccgtaaaagattggaaagacccacaaaaagaacttgcactaaaatttatatatactactaataataggtaaatacaactactgttatccaat |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||| |
|
|
| T |
36124055 |
aaaatacaccgtaaaagattggaaagacccacaaaaagtacttgcactaaaatttatatataccactaataataggtaaacacaactactgttatccaat |
36123956 |
T |
|
| Q |
117 |
caaagcacgaattagcacctcaaaaatataaccattttttgaa-gacnnnnnnnn--gtatgtagtttatagtaatttgaaatatctaagtatattctac |
213 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||| ||| |||||||||||||||||||||||||| || ||||||||||||| |
|
|
| T |
36123955 |
caaagcacgaattagcacctaaaaaatataaccattttttgaaagacaaaaaaaaatgtatgtagtttatagtaatttgaaatgtccaagtatattctac |
36123856 |
T |
|
| Q |
214 |
aaattgatgacttacatatagtctcaaaacgatatagtttaagtagtgtgtgttgtcttctttgcctaagcatatgatttctcatttgttactcactctt |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36123855 |
aaattgatgacttacatatagtctcaaaacgatatagtttaagtagtgtgggttgtcttctttgcctaagcatatgatttctcatttgttactcactctt |
36123756 |
T |
|
| Q |
314 |
tcttaagtaaattcttgagtcgtcaatttgtgggagtagttttacagcgtactcc |
368 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||| |||||||||||||||| |
|
|
| T |
36123755 |
tcttaagtaaattcttgagtcgtcaatttgagggagtaattttacagcgtactcc |
36123701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 176 - 212
Target Start/End: Complemental strand, 36122331 - 36122295
Alignment:
| Q |
176 |
tagtttatagtaatttgaaatatctaagtatattcta |
212 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||| |
|
|
| T |
36122331 |
tagtttatagtaatttgaaacgtctaagtatattcta |
36122295 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University