View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7121_high_5 (Length: 320)
Name: NF7121_high_5
Description: NF7121
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7121_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 309
Target Start/End: Complemental strand, 36123693 - 36123386
Alignment:
| Q |
1 |
tatgagcatattctcaaaacactaggtcacaacatatcatgtgagtgaaatgtctaagaataaaacgcaagtcacacagcatgtgactaaaatgtataag |
100 |
Q |
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| T |
36123693 |
tatgagcatattctcaaaacactaggtcacaacatatcatgtgagtgaaatgtctaagaataaaacgcaagtcacacagcatgtgactaaaatgtctaag |
36123594 |
T |
|
| Q |
101 |
catatttaaaggaaaggnnnnnnnnngactaagcatgtatcaatcacaattttgaacacaattggttcaattttttgcattgtttatagtaatttgaaat |
200 |
Q |
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| T |
36123593 |
catatttaaaggaaaggaaaaaaaa-gactaagcatgtatcaatcacaattttgaacacaattggttcaattttttgcattgtttatagtaatttgaaat |
36123495 |
T |
|
| Q |
201 |
atgatctatgttattaactatgtatcgttttatttagaagaatatcatttcaacaacnnnnnnncaatacaattagaatatacaaataaatatagatatt |
300 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
36123494 |
atgatctatgttattaactatgtattgttttatttagaagaatattatttcaacaactttttttcaatacaattagaatatacaaataaatatagatatt |
36123395 |
T |
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| Q |
301 |
aacaccaaa |
309 |
Q |
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||||||||| |
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| T |
36123394 |
aacaccaaa |
36123386 |
T |
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