View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7121_low_1 (Length: 461)
Name: NF7121_low_1
Description: NF7121
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7121_low_1 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 356; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 21 - 440
Target Start/End: Original strand, 1743464 - 1743883
Alignment:
| Q |
21 |
ttagtaatccaaaatcagatgcttgagaatccaaaggaaagctaatatcaagctcttcaagaaatgggaaacaataagctatcactaccagatggctatc |
120 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| || ||||||||||||||||||||||||||||| |
|
|
| T |
1743464 |
ttagtaatccaaaatcagatgcttgagaatccaaaggaaagctaatgtcaagctcttcaagaaatggaaagcaataagctatcactaccagatggctatc |
1743563 |
T |
|
| Q |
121 |
gcgaagagagccaatgtttgagcaaatcaaaaccctcaagtttatcatctttgtaccgagttctcgcaatccatcaacaggaagtgttctttggttggaa |
220 |
Q |
| |
|
||||||||| |||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1743564 |
gcgaagagatccaacgttcgagcaaatcaaaaccctcaagtttatcatctttgtaccgagttctcgcaatccatcaacaggaagtgttctttggttggaa |
1743663 |
T |
|
| Q |
221 |
agattaatcaaatctaggtccaacccagattgtgaaatttgatgaaggatgtcttctagttcaccattgaagtgactaaaatctatgactttgagactta |
320 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||| |
|
|
| T |
1743664 |
agattaatcaaatcaaggtccaacccagattgtgaaatttgatgaaggatgtcttctagttcaccattgaagtgactaaaatctatggctttgagcctta |
1743763 |
T |
|
| Q |
321 |
aaaatctcgagagtagccgagaaaggaataaaacagtggaatcatgtattgttagagagaatttaactcggtttgtaaaggaaaggaatttcttgcagac |
420 |
Q |
| |
|
|||||||||||||||||||||||||||||| || |||||||||||||||||||| ||| ||||| ||| ||||||||| ||||||||||||||||||||| |
|
|
| T |
1743764 |
aaaatctcgagagtagccgagaaaggaatagaatagtggaatcatgtattgttaaagaaaatttcacttggtttgtaatggaaaggaatttcttgcagac |
1743863 |
T |
|
| Q |
421 |
catagaaacagactccaaat |
440 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
1743864 |
catagaaacagactccaaat |
1743883 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 25 - 440
Target Start/End: Complemental strand, 2006914 - 2006499
Alignment:
| Q |
25 |
taatccaaaatcagatgcttgagaatccaaaggaaagctaatatcaagctcttcaagaaatgggaaacaataagctatcactaccagatggctatcgcga |
124 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| || ||||||||||||||||||||||||||||||| | |
|
|
| T |
2006914 |
taatccaaaatcagatgcttgagaatccaaaggaaagctaatgtcaagctcttcaagaaatggaaagcaataagctatcactaccagatggctatcgcaa |
2006815 |
T |
|
| Q |
125 |
agagagccaatgtttgagcaaatcaaaaccctcaagtttatcatctttgtaccgagttctcgcaatccatcaacaggaagtgttctttggttggaaagat |
224 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||| |||||| |||||||||||||||||||||| |||||| ||||||||||||| |
|
|
| T |
2006814 |
agagagccaatgtttgagcaaatcaaaaccctcaggtttatcatctttgaaccgagctctcgcaatccatcaacaggaactgttctctggttggaaagat |
2006715 |
T |
|
| Q |
225 |
taatcaaatctaggtccaacccagattgtgaaatttgatgaaggatgtcttctagttcaccattgaagtgactaaaatctatgactttgagacttaaaaa |
324 |
Q |
| |
|
||| ||||| ||||||| |||||||||||||| ||||||||| | | |||| ||||||||||||||||| |||||||||| ||||||||| |||||||| |
|
|
| T |
2006714 |
taacgaaatcaaggtccagcccagattgtgaaacttgatgaagcaagccttcaagttcaccattgaagtggctaaaatctaagactttgagccttaaaaa |
2006615 |
T |
|
| Q |
325 |
tctcgagagtagccgagaaaggaataaaacagtggaatcatgtattgttagagagaatttaactcggtttgtaaaggaaaggaatttcttgcagaccata |
424 |
Q |
| |
|
|| | |||||||||||| ||||||| |||||||| |||||||| ||||||||| ||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
2006614 |
tcccaagagtagccgaggaaggaatggaacagtgggatcatgtactgttagagatgctttaactcggtttgtaatggaaaggaatttcttgcagaccata |
2006515 |
T |
|
| Q |
425 |
gaaacagactccaaat |
440 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
2006514 |
gaaacagactccaaat |
2006499 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 219 - 315
Target Start/End: Complemental strand, 1498419 - 1498323
Alignment:
| Q |
219 |
aaagattaatcaaatctaggtccaacccagattgtgaaatttgatgaaggatgtcttctagttcaccattgaagtgactaaaatctatgactttgag |
315 |
Q |
| |
|
||||||||| ||||| |||||||| | ||||| | ||||||||||||| | | ||||||||| ||| ||||||| |||| |||||||||||||| |
|
|
| T |
1498419 |
aaagattaaccaaattaaggtccaatctagattataaaatttgatgaagcaagctttctagttctccaatgaagtggctaaggtctatgactttgag |
1498323 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 180 - 220
Target Start/End: Original strand, 1749015 - 1749055
Alignment:
| Q |
180 |
gttctcgcaatccatcaacaggaagtgttctttggttggaa |
220 |
Q |
| |
|
|||||||||||||||||| ||||||||||| ||||||||| |
|
|
| T |
1749015 |
gttctcgcaatccatcaaggggaagtgttctctggttggaa |
1749055 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 229 - 294
Target Start/End: Complemental strand, 44577603 - 44577538
Alignment:
| Q |
229 |
caaatctaggtccaacccagattgtgaaatttgatgaaggatgtcttctagttcaccattgaagtg |
294 |
Q |
| |
|
|||||| ||||||||||||| |||||||||||||||||| | | ||||||||||||||||||||| |
|
|
| T |
44577603 |
caaatcaaggtccaacccagtttgtgaaatttgatgaagcaagcattctagttcaccattgaagtg |
44577538 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University